Genomics meets nanoscience: probing genes and the cell nucleus at 10-9 meters.

Politz J, Pombo A.

Genome Biol. 2002;3(3):REPORTS4007. Epub 2002 Feb 25.

PMID: 11897022 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

In vivo robustness analysis of cell division cycle genes in Saccharomyces cerevisiae.

Moriya H, Shimizu-Yoshida Y, Kitano H.

PLoS Genet. 2006 Jul;2(7):e111. Epub 2006 Jun 5. Erratum in: PLoS Genet. 2006 Dec;2(12):e218.

PMID: 16839182 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Yeast functional genomics and cell biology: no longer in the dark.

Friesen H, Millman JS, Andrews BJ.

Genome Biol. 2003;4(12):352. Epub 2003 Nov 24.

PMID: 14659014 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

From linear genome sequence to three-dimensional organization of the cell nucleus.

Politz J, van Driel R, Sauer M, Pombo A.

Genome Biol. 2003;4(3):310. Epub 2003 Feb 28. No abstract available.

PMID: 12620101 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Eukaryotic regulatory element conservation analysis and identification using comparative genomics.

Liu Y, Liu XS, Wei L, Altman RB, Batzoglou S.

Genome Res. 2004 Mar;14(3):451-8.

PMID: 14993210 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Genome function and nuclear architecture: from gene expression to nanoscience.

O'Brien TP, Bult CJ, Cremer C, Grunze M, Knowles BB, Langowski J, McNally J, Pederson T, Politz JC, Pombo A, Schmahl G, Spatz JP, van Driel R.

Genome Res. 2003 Jun;13(6A):1029-41. Epub 2003 May 12. Review.

PMID: 12743020 [PubMed - indexed for MEDLINE]

Related Articles

Single-cell gene expression profiling.

Levsky JM, Shenoy SM, Pezo RC, Singer RH.

Science. 2002 Aug 2;297(5582):836-40.

PMID: 12161654 [PubMed - indexed for MEDLINE]

Related Articles

Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway.

Jones DL, Petty J, Hoyle DC, Hayes A, Ragni E, Popolo L, Oliver SG, Stateva LI.

Physiol Genomics. 2003 Dec 16;16(1):107-18.

PMID: 14570984 [PubMed - indexed for MEDLINE]

Related Articles

Genomics: Yeast rises again.

Salzberg SL.

Nature. 2003 May 15;423(6937):233-4. No abstract available.

PMID: 12748625 [PubMed - indexed for MEDLINE]

Related Articles

Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome.

Havilio M, Levanon EY, Lerman G, Kupiec M, Eisenberg E.

BMC Genomics. 2005 Jun 16;6(1):93.

PMID: 15960846 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Nucleosome positions predicted through comparative genomics.

Ioshikhes IP, Albert I, Zanton SJ, Pugh BF.

Nat Genet. 2006 Oct;38(10):1210-5. Epub 2006 Sep 10.

PMID: 16964265 [PubMed - indexed for MEDLINE]

Related Articles

Genomic response programs of Saccharomyces cerevisiae following protoplasting and regeneration.

Castillo L, Martínez AI, Gelis S, Ruiz-Herrera J, Valentín E, Sentandreu R.

Fungal Genet Biol. 2008 Mar;45(3):253-65. Epub 2007 Oct 12.

PMID: 18032075 [PubMed - indexed for MEDLINE]

Related Articles

Conserved codon composition of ribosomal protein coding genes in Escherichia coli, Mycobacterium tuberculosis and Saccharomyces cerevisiae: lessons from supervised machine learning in functional genomics.

Lin K, Kuang Y, Joseph JS, Kolatkar PR.

Nucleic Acids Res. 2002 Jun 1;30(11):2599-607.

PMID: 12034849 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

High-dimensional and large-scale phenotyping of yeast mutants.

Ohya Y, Sese J, Yukawa M, Sano F, Nakatani Y, Saito TL, Saka A, Fukuda T, Ishihara S, Oka S, Suzuki G, Watanabe M, Hirata A, Ohtani M, Sawai H, Fraysse N, Latgé JP, François JM, Aebi M, Tanaka S, Muramatsu S, Araki H, Sonoike K, Nogami S, Morishita S.

Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19015-20. Epub 2005 Dec 19.

PMID: 16365294 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Predicting essential genes in fungal genomes.

Seringhaus M, Paccanaro A, Borneman A, Snyder M, Gerstein M.

Genome Res. 2006 Sep;16(9):1126-35. Epub 2006 Aug 9.

PMID: 16899653 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Genome-wide nuclear morphology screen identifies novel genes involved in nuclear architecture and gene-silencing in Saccharomyces cerevisiae.

Teixeira MT, Dujon B, Fabre E.

J Mol Biol. 2002 Aug 23;321(4):551-61.

PMID: 12206772 [PubMed - indexed for MEDLINE]

Related Articles

Yeast on drugs: Saccharomyces cerevisiae as a tool for anticancer drug research.

Menacho-Márquez M, Murguía JR.

Clin Transl Oncol. 2007 Apr;9(4):221-8. Review.

PMID: 17462974 [PubMed - indexed for MEDLINE]

Related Articles

Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures.

Dunn B, Levine RP, Sherlock G.

BMC Genomics. 2005 Apr 16;6(1):53.

PMID: 15833139 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Genomic analysis of stationary-phase and exit in Saccharomyces cerevisiae: gene expression and identification of novel essential genes.

Martinez MJ, Roy S, Archuletta AB, Wentzell PD, Anna-Arriola SS, Rodriguez AL, Aragon AD, Quiñones GA, Allen C, Werner-Washburne M.

Mol Biol Cell. 2004 Dec;15(12):5295-305. Epub 2004 Sep 29.

PMID: 15456898 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

A genome-wide telomere screen in yeast: the long and short of it all.

Edmonds D, Breitkreutz BJ, Harrington L.

Proc Natl Acad Sci U S A. 2004 Jun 29;101(26):9515-6. Epub 2004 Jun 22. No abstract available.

PMID: 15213325 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC