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Insights into cereal genomes from two draft genome sequences of rice.

Bancroft I.

Genome Biol. 2002;3(6):REVIEWS1015. Epub 2002 May 28. Review.

PMID: 12093379 [PubMed - indexed for MEDLINE]

A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S.

Science. 2002 Apr 5;296(5565):92-100.

PMID: 11935018 [PubMed - indexed for MEDLINE]

Rice as a model for cereal genomics.

Goff SA.

Curr Opin Plant Biol. 1999 Apr;2(2):86-9. Review.

PMID: 10322198 [PubMed - indexed for MEDLINE]

In-depth view of structure, activity, and evolution of rice chromosome 10.

Rice Chromosome 10 Sequencing Consortium.

Science. 2003 Jun 6;300(5625):1566-9. Erratum in: Science. 2003 Sep 5;301(5638):1327.

PMID: 12791992 [PubMed - indexed for MEDLINE]

Rice--the pivotal genome in cereal comparative genetics.

Gale M, Moore G, Devos K.

Novartis Found Symp. 2001;236:46-53; discussion 53-8. Review.

PMID: 11387986 [PubMed - indexed for MEDLINE]

How can we use genomics to improve cereals with rice as a reference genome?

Xu Y, McCouch SR, Zhang Q.

Plant Mol Biol. 2005 Sep;59(1):7-26.

PMID: 16217598 [PubMed - indexed for MEDLINE]

Cereal genome analysis using rice as a model.

Havukkala IJ.

Curr Opin Genet Dev. 1996 Dec;6(6):711-4. Review.

PMID: 8994841 [PubMed - indexed for MEDLINE]

The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists.

Yuan Q, Ouyang S, Liu J, Suh B, Cheung F, Sultana R, Lee D, Quackenbush J, Buell CR.

Nucleic Acids Res. 2003 Jan 1;31(1):229-33.

PMID: 12519988 [PubMed - indexed for MEDLINE]

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Rice genomes: a grainy view of future evolutionary research.

Livingstone K, Rieseberg LH.

Curr Biol. 2002 Jul 9;12(13):R470-1. Review.

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Evidence for an ancient whole-genome duplication event in rice and other cereals.

Tian CG, Xiong YQ, Liu TY, Sun SH, Chen LB, Chen MS.

Yi Chuan Xue Bao. 2005 May;32(5):519-27.

PMID: 16018264 [PubMed - indexed for MEDLINE]

11:

Structure and evolution of cereal genomes.

Paterson AH, Bowers JE, Peterson DG, Estill JC, Chapman BA.

Curr Opin Genet Dev. 2003 Dec;13(6):644-50. Review.

PMID: 14638328 [PubMed - indexed for MEDLINE]

12:

The rice genome. The most precious things are not jade and pearls.

Ronald P, Leung H.

Science. 2002 Apr 5;296(5565):58-9. No abstract available.

PMID: 11935008 [PubMed - indexed for MEDLINE]

13:

Cereal genome evolution: pastoral pursuits with 'Lego' genomes.

Moore G.

Curr Opin Genet Dev. 1995 Dec;5(6):717-24. Review.

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The rice genome. Rice: boiled down to bare essentials.

Normile D, Pennisi E.

Science. 2002 Apr 5;296(5565):32-6. No abstract available.

PMID: 11935000 [PubMed - indexed for MEDLINE]

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Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences.

Gao L, McCarthy EM, Ganko EW, McDonald JF.

BMC Genomics. 2004 Mar 2;5(1):18.

PMID: 15040813 [PubMed - indexed for MEDLINE]

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The rice genome. The cereal of the world's poor takes center stage.

Cantrell RP, Reeves TG.

Science. 2002 Apr 5;296(5565):53. No abstract available.

PMID: 11935006 [PubMed - indexed for MEDLINE]

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Conserved noncoding sequences among cultivated cereal genomes identify candidate regulatory sequence elements and patterns of promoter evolution.

Guo H, Moose SP.

Plant Cell. 2003 May;15(5):1143-58.

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The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants.

Notsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, Hirai A, Kadowaki K.

Mol Genet Genomics. 2002 Dec;268(4):434-45. Epub 2002 Nov 1.

PMID: 12471441 [PubMed - indexed for MEDLINE]

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The bioinformatics challenges in comparative analysis of cereal genomes-an overview.

Bellgard M, Ye J, Gojobori T, Appels R.

Funct Integr Genomics. 2004 Mar;4(1):1-11. Epub 2004 Feb 10. Review.

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Structural and functional analysis of rice genome.

Tyagi AK, Khurana JP, Khurana P, Raghuvanshi S, Gaur A, Kapur A, Gupta V, Kumar D, Ravi V, Vij S, Khurana P, Sharma S.

J Genet. 2004 Apr;83(1):79-99. Review.

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