The SWIRM domain: a conserved module found in chromosomal proteins points to novel chromatin-modifying activities.

Aravind L, Iyer LM.

Genome Biol. 2002 Jul 24;3(8):RESEARCH0039. Epub 2002 Jul 24.

PMID: 12186646 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes.

Da G, Lenkart J, Zhao K, Shiekhattar R, Cairns BR, Marmorstein R.

Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2057-62. Epub 2006 Feb 3.

PMID: 16461455 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Molecular biology of the chromo domain: an ancient chromatin module comes of age.

Eissenberg JC.

Gene. 2001 Sep 5;275(1):19-29. Review.

PMID: 11574148 [PubMed - indexed for MEDLINE]

Related Articles

Structure and chromosomal DNA binding of the SWIRM domain.

Qian C, Zhang Q, Li S, Zeng L, Walsh MJ, Zhou MM.

Nat Struct Mol Biol. 2005 Dec;12(12):1078-85. Epub 2005 Nov 20.

PMID: 16299514 [PubMed - indexed for MEDLINE]

Related Articles

The Epc-N domain: a predicted protein-protein interaction domain found in select chromatin associated proteins.

Perry J.

BMC Genomics. 2006 Jan 16;7:6.

PMID: 16412250 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Proteins with two SUMO-like domains in chromatin-associated complexes: the RENi (Rad60-Esc2-NIP45) family.

Novatchkova M, Bachmair A, Eisenhaber B, Eisenhaber F.

BMC Bioinformatics. 2005 Feb 7;6:22.

PMID: 15698469 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Extensive domain shuffling in transcription regulators of DNA viruses and implications for the origin of fungal APSES transcription factors.

Iyer LM, Koonin EV, Aravind L.

Genome Biol. 2002;3(3):RESEARCH0012. Epub 2002 Feb 13.

PMID: 11897024 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

In silico characterization of the INO80 subfamily of SWI2/SNF2 chromatin remodeling proteins.

Bakshi R, Prakash T, Dash D, Brahmachari V.

Biochem Biophys Res Commun. 2004 Jul 16;320(1):197-204.

PMID: 15207721 [PubMed - indexed for MEDLINE]

Related Articles

Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes.

Boyer LA, Langer MR, Crowley KA, Tan S, Denu JM, Peterson CL.

Mol Cell. 2002 Oct;10(4):935-42.

PMID: 12419236 [PubMed - indexed for MEDLINE]

Related Articles

AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time.

Sarnowski TJ, Swiezewski S, Pawlikowska K, Kaczanowski S, Jerzmanowski A.

Nucleic Acids Res. 2002 Aug 1;30(15):3412-21.

PMID: 12140326 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Identification and analysis of chromodomain-containing proteins encoded in the mouse transcriptome.

Tajul-Arifin K, Teasdale R, Ravasi T, Hume DA, Mattick JS; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1416-29.

PMID: 12819141 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Differential targeting of two distinct SWI/SNF-related Drosophila chromatin-remodeling complexes.

Mohrmann L, Langenberg K, Krijgsveld J, Kal AJ, Heck AJ, Verrijzer CP.

Mol Cell Biol. 2004 Apr;24(8):3077-88.

PMID: 15060132 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability.

Anantharaman V, Aravind L.

BMC Genomics. 2004 Jul 16;5(1):45.

PMID: 15257761 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Solution structure of the SWIRM domain of human histone demethylase LSD1.

Tochio N, Umehara T, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Watanabe S, Tomo Y, Hanada M, Ikari M, Sato M, Terada T, Nagase T, Ohara O, Shirouzu M, Tanaka A, Kigawa T, Yokoyama S.

Structure. 2006 Mar;14(3):457-68.

PMID: 16531230 [PubMed - indexed for MEDLINE]

Related Articles

Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.

Pandey R, Müller A, Napoli CA, Selinger DA, Pikaard CS, Richards EJ, Bender J, Mount DW, Jorgensen RA.

Nucleic Acids Res. 2002 Dec 1;30(23):5036-55.

PMID: 12466527 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

The GOLD domain, a novel protein module involved in Golgi function and secretion.

Anantharaman V, Aravind L.

Genome Biol. 2002;3(5):research0023. Epub 2002 Apr 24.

PMID: 12049664 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

HEAT repeats associated with condensins, cohesins, and other complexes involved in chromosome-related functions.

Neuwald AF, Hirano T.

Genome Res. 2000 Oct;10(10):1445-52.

PMID: 11042144 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

The trithorax group gene moira encodes a brahma-associated putative chromatin-remodeling factor in Drosophila melanogaster.

Crosby MA, Miller C, Alon T, Watson KL, Verrijzer CP, Goldman-Levi R, Zak NB.

Mol Cell Biol. 1999 Feb;19(2):1159-70.

PMID: 9891050 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Novel SWI/SNF chromatin-remodeling complexes contain a mixed-lineage leukemia chromosomal translocation partner.

Nie Z, Yan Z, Chen EH, Sechi S, Ling C, Zhou S, Xue Y, Yang D, Murray D, Kanakubo E, Cleary ML, Wang W.

Mol Cell Biol. 2003 Apr;23(8):2942-52.

PMID: 12665591 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

BEN: a novel domain in chromatin factors and DNA viral proteins.

Abhiman S, Iyer LM, Aravind L.

Bioinformatics. 2008 Feb 15;24(4):458-61. Epub 2008 Jan 18.

PMID: 18203771 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC