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Items 1 - 20 of 154
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1:

Computational discovery of sense-antisense transcription in the human and mouse genomes.

Shendure J, Church GM.

Genome Biol. 2002 Aug 22;3(9):RESEARCH0044. Epub 2002 Aug 22.

PMID: 12225583 [PubMed - indexed for MEDLINE]

2:

Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation.

Jen CH, Michalopoulos I, Westhead DR, Meyer P.

Genome Biol. 2005;6(6):R51. Epub 2005 Jun 1.

PMID: 15960803 [PubMed - indexed for MEDLINE]

3:

Conservation of human alternative splice events in mouse.

Thanaraj TA, Clark F, Muilu J.

Nucleic Acids Res. 2003 May 15;31(10):2544-52.

PMID: 12736303 [PubMed - indexed for MEDLINE]

4:

Widespread occurrence of antisense transcription in the human genome.

Yelin R, Dahary D, Sorek R, Levanon EY, Goldstein O, Shoshan A, Diber A, Biton S, Tamir Y, Khosravi R, Nemzer S, Pinner E, Walach S, Bernstein J, Savitsky K, Rotman G.

Nat Biotechnol. 2003 Apr;21(4):379-86. Epub 2003 Mar 17.

PMID: 12640466 [PubMed - indexed for MEDLINE]

6:

Characterization of genomic organization of the adenosine A2A receptor gene by molecular and bioinformatics analyses.

Yu L, Frith MC, Suzuki Y, Peterfreund RA, Gearan T, Sugano S, Schwarzschild MA, Weng Z, Fink JS, Chen JF.

Brain Res. 2004 Mar 12;1000(1-2):156-73.

PMID: 15053963 [PubMed - indexed for MEDLINE]

7:

Revised genomic structure of the human ghrelin gene and identification of novel exons, alternative splice variants and natural antisense transcripts.

Seim I, Collet C, Herington AC, Chopin LK.

BMC Genomics. 2007 Aug 30;8:298.

PMID: 17727735 [PubMed - indexed for MEDLINE]

8:

Gene structure prediction and alternative splicing analysis using genomically aligned ESTs.

Kan Z, Rouchka EC, Gish WR, States DJ.

Genome Res. 2001 May;11(5):889-900.

PMID: 11337482 [PubMed - indexed for MEDLINE]

9:

Conserved alternative and antisense transcripts at the programmed cell death 2 locus.

Mihola O, Forejt J, Trachtulec Z.

BMC Genomics. 2007 Jan 18;8:20.

PMID: 17233890 [PubMed - indexed for MEDLINE]

10:

Antisense transcripts with FANTOM2 clone set and their implications for gene regulation.

Kiyosawa H, Yamanaka I, Osato N, Kondo S, Hayashizaki Y; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1324-34.

PMID: 12819130 [PubMed - indexed for MEDLINE]

12:

Antisense transcripts with rice full-length cDNAs.

Osato N, Yamada H, Satoh K, Ooka H, Yamamoto M, Suzuki K, Kawai J, Carninci P, Ohtomo Y, Murakami K, Matsubara K, Kikuchi S, Hayashizaki Y.

Genome Biol. 2003;5(1):R5. Epub 2003 Dec 11.

PMID: 14709177 [PubMed - indexed for MEDLINE]

13:

Many human genes are transcribed from the antisense promoter of L1 retrotransposon.

Nigumann P, Redik K, Mätlik K, Speek M.

Genomics. 2002 May;79(5):628-34.

PMID: 11991712 [PubMed - indexed for MEDLINE]

15:

Transcriptional interferences in cis natural antisense transcripts of humans and mice.

Osato N, Suzuki Y, Ikeo K, Gojobori T.

Genetics. 2007 Jun;176(2):1299-306. Epub 2007 Apr 3.

PMID: 17409075 [PubMed - indexed for MEDLINE]

16:

Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription.

Nakaya HI, Amaral PP, Louro R, Lopes A, Fachel AA, Moreira YB, El-Jundi TA, da Silva AM, Reis EM, Verjovski-Almeida S.

Genome Biol. 2007;8(3):R43.

PMID: 17386095 [PubMed - indexed for MEDLINE]

17:

Transcriptome and genome conservation of alternative splicing events in humans and mice.

Sugnet CW, Kent WJ, Ares M Jr, Haussler D.

Pac Symp Biocomput. 2004:66-77.

PMID: 14992493 [PubMed - indexed for MEDLINE]

18:

A transcript finishing initiative for closing gaps in the human transcriptome.

Sogayar MC, Camargo AA, Bettoni F, Carraro DM, Pires LC, Parmigiani RB, Ferreira EN, de Sá Moreira E, do Rosário D de O Latorre M, Simpson AJ, Cruz LO, Degaki TL, Festa F, Massirer KB, Sogayar MC, Filho FC, Camargo LP, Cunha MA, De Souza SJ, Faria M Jr, Giuliatti S, Kopp L, de Oliveira PS, Paiva PB, Pereira AA, Pinheiro DG, Puga RD, S de Souza JE, Albuquerque DM, Andrade LE, Baia GS, Briones MR, Cavaleiro-Luna AM, Cerutti JM, Costa FF, Costanzi-Strauss E, Espreafico EM, Ferrasi AC, Ferro ES, Fortes MA, Furchi JR, Giannella-Neto D, Goldman GH, Goldman MH, Gruber A, Guimarães GS, Hackel C, Henrique-Silva F, Kimura ET, Leoni SG, Macedo C, Malnic B, Manzini B CV, Marie SK, Martinez-Rossi NM, Menossi M, Miracca EC, Nagai MA, Nobrega FG, Nobrega MP, Oba-Shinjo SM, Oliveira MK, Orabona GM, Otsuka AY, Paço-Larson ML, Paixão BM, Pandolfi JR, Pardini MI, Passos Bueno MR, Passos GA, Pesquero JB, Pessoa JG, Rahal P, Rainho CA, Reis CP, Ricca TI, Rodrigues V, Rogatto SR, Romano CM, Romeiro JG, Rossi A, Sá RG, Sales MM, Sant'Anna SC, Santarosa PL, Segato F, Silva WA Jr, Silva ID, Silva NP, Soares-Costa A, Sonati MF, Strauss BE, Tajara EH, Valentini SR, Villanova FE, Ward LS, Zanette DL; Ludwig-FAPESP Transcript Finishing Initiative.

Genome Res. 2004 Jul;14(7):1413-23. Epub 2004 Jun 14.

PMID: 15197164 [PubMed - indexed for MEDLINE]

19:

A non-EST-based method for exon-skipping prediction.

Sorek R, Shemesh R, Cohen Y, Basechess O, Ast G, Shamir R.

Genome Res. 2004 Aug;14(8):1617-23.

PMID: 15289480 [PubMed - indexed for MEDLINE]

20:

Clusters of internally primed transcripts reveal novel long noncoding RNAs.

Furuno M, Pang KC, Ninomiya N, Fukuda S, Frith MC, Bult C, Kai C, Kawai J, Carninci P, Hayashizaki Y, Mattick JS, Suzuki H.

PLoS Genet. 2006 Apr;2(4):e37. Epub 2006 Apr 28.

PMID: 16683026 [PubMed - indexed for MEDLINE]

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