Turn recording back on
Long terminal repeat retrotransposons of Oryza sativa.
McCarthy EM, Liu J, Lizhi G, McDonald JF.
Genome Biol. 2002 Sep 13;3(10):RESEARCH0053. Epub 2002 Sep 13.
PMID: 12372141 [PubMed - indexed for MEDLINE]
Related Articles Free article in PMC
Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences.
Gao L, McCarthy EM, Ganko EW, McDonald JF.
BMC Genomics. 2004 Mar 2;5(1):18.
PMID: 15040813 [PubMed - indexed for MEDLINE]
Long terminal repeat retrotransposons of Mus musculus.
McCarthy EM, McDonald JF.
Genome Biol. 2004;5(3):R14. Epub 2004 Feb 13.
PMID: 15003117 [PubMed - indexed for MEDLINE]
Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L.
Vitte C, Panaud O.
Mol Biol Evol. 2003 Apr;20(4):528-40. Epub 2003 Mar 5.
PMID: 12654934 [PubMed - indexed for MEDLINE]
Related Articles
Retrotranspositions in orthologous regions of closely related grass species.
Du C, Swigonová Z, Messing J.
BMC Evol Biol. 2006 Aug 16;6:62.
PMID: 16914031 [PubMed - indexed for MEDLINE]
LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice.
Wang H, Liu JS.
BMC Genomics. 2008 Aug 10;9:382.
PMID: 18691433 [PubMed - indexed for MEDLINE]
Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice.
Ma J, Devos KM, Bennetzen JL.
Genome Res. 2004 May;14(5):860-9. Epub 2004 Apr 12.
PMID: 15078861 [PubMed - indexed for MEDLINE]
Survey of long terminal repeat retrotransposons of domesticated silkworm (Bombyx mori).
Jin-Shan X, Qing-You X, Jun L, Guo-Qing P, Ze-Yang Z.
Insect Biochem Mol Biol. 2005 Aug;35(8):921-9.
PMID: 15944087 [PubMed - indexed for MEDLINE]
LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss.
Vitte C, Panaud O, Quesneville H.
BMC Genomics. 2007 Jul 6;8:218.
PMID: 17617907 [PubMed - indexed for MEDLINE]
Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza.
Roulin A, Piegu B, Wing RA, Panaud O.
Plant J. 2008 Mar;53(6):950-9. Epub 2007 Dec 6.
PMID: 18088314 [PubMed - indexed for MEDLINE]
RetrOryza: a database of the rice LTR-retrotransposons.
Chaparro C, Guyot R, Zuccolo A, Piégu B, Panaud O.
Nucleic Acids Res. 2007 Jan;35(Database issue):D66-70. Epub 2006 Oct 28.
PMID: 17071960 [PubMed - indexed for MEDLINE]
LTR_STRUC: a novel search and identification program for LTR retrotransposons.
Bioinformatics. 2003 Feb 12;19(3):362-7.
PMID: 12584121 [PubMed - indexed for MEDLINE]
The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements.
Copeland CS, Mann VH, Morales ME, Kalinna BH, Brindley PJ.
BMC Evol Biol. 2005 Feb 23;5(1):20.
PMID: 15725362 [PubMed - indexed for MEDLINE]
Characterization of SR3 reveals abundance of non-LTR retrotransposons of the RTE clade in the genome of the human blood fluke, Schistosoma mansoni.
Laha T, Kewgrai N, Loukas A, Brindley PJ.
BMC Genomics. 2005 Nov 4;6:154.
PMID: 16271150 [PubMed - indexed for MEDLINE]
The non-LTR retrotransposons in Ciona intestinalis: new insights into the evolution of chordate genomes.
Permanyer J, Gonzàlez-Duarte R, Albalat R.
Genome Biol. 2003;4(11):R73. Epub 2003 Oct 21.
PMID: 14611659 [PubMed - indexed for MEDLINE]
De novo identification of LTR retrotransposons in eukaryotic genomes.
Rho M, Choi JH, Kim S, Lynch M, Tang H.
BMC Genomics. 2007 Apr 3;8:90.
PMID: 17407597 [PubMed - indexed for MEDLINE]
Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families.
Wicker T, Keller B.
Genome Res. 2007 Jul;17(7):1072-81. Epub 2007 Jun 7.
PMID: 17556529 [PubMed - indexed for MEDLINE]
TEnest: automated chronological annotation and visualization of nested plant transposable elements.
Kronmiller BA, Wise RP.
Plant Physiol. 2008 Jan;146(1):45-59. Epub 2007 Nov 21.
PMID: 18032588 [PubMed - indexed for MEDLINE]
Diaspora, a large family of Ty3-gypsy retrotransposons in Glycine max, is an envelope-less member of an endogenous plant retrovirus lineage.
Yano ST, Panbehi B, Das A, Laten HM.
BMC Evol Biol. 2005 May 5;5(1):30.
PMID: 15876351 [PubMed - indexed for MEDLINE]
Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts.
Neuvéglise C, Feldmann H, Bon E, Gaillardin C, Casaregola S.
Genome Res. 2002 Jun;12(6):930-43.
PMID: 12045146 [PubMed - indexed for MEDLINE]