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Items 1 - 20 of 164
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1:

The society of genes: networks of functional links between genes from comparative genomics.

Yanai I, DeLisi C.

Genome Biol. 2002 Oct 25;3(11):research0064. Epub 2002 Oct 25.

PMID: 12429063 [PubMed - indexed for MEDLINE]

2:

Genomic functional annotation using co-evolution profiles of gene clusters.

Zheng Y, Roberts RJ, Kasif S.

Genome Biol. 2002 Oct 10;3(11):RESEARCH0060. Epub 2002 Oct 10.

PMID: 12429059 [PubMed - indexed for MEDLINE]

3:

Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.

Fujibuchi W, Ogata H, Matsuda H, Kanehisa M.

Nucleic Acids Res. 2000 Oct 15;28(20):4029-36.

PMID: 11024184 [PubMed - indexed for MEDLINE]

4:

Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales.

Guerrero G, Peralta H, Aguilar A, Díaz R, Villalobos MA, Medrano-Soto A, Mora J.

BMC Evol Biol. 2005 Oct 17;5:55.

PMID: 16229745 [PubMed - indexed for MEDLINE]

5:

Identifying functional links between genes using conserved chromosomal proximity.

Yanai I, Mellor JC, DeLisi C.

Trends Genet. 2002 Apr;18(4):176-9.

PMID: 11932011 [PubMed - indexed for MEDLINE]

6:

Comparative genomics of vertebrate Fox cluster loci.

Wotton KR, Shimeld SM.

BMC Genomics. 2006 Oct 24;7:271.

PMID: 17062144 [PubMed - indexed for MEDLINE]

7:

Comparative genomics of gene-family size in closely related bacteria.

Pushker R, Mira A, Rodríguez-Valera F.

Genome Biol. 2004;5(4):R27. Epub 2004 Mar 18.

PMID: 15059260 [PubMed - indexed for MEDLINE]

8:

Conserved clusters of functionally related genes in two bacterial genomes.

Tamames J, Casari G, Ouzounis C, Valencia A.

J Mol Evol. 1997 Jan;44(1):66-73.

PMID: 9010137 [PubMed - indexed for MEDLINE]

9:

Comparing bacterial genomes through conservation profiles.

Martin MJ, Herrero J, Mateos A, Dopazo J.

Genome Res. 2003 May;13(5):991-8. Epub 2003 Apr 14.

PMID: 12695324 [PubMed - indexed for MEDLINE]

10:

Gene teams: a new formalization of gene clusters for comparative genomics.

Luc N, Risler JL, Bergeron A, Raffinot M.

Comput Biol Chem. 2003 Feb;27(1):59-67.

PMID: 12798040 [PubMed - indexed for MEDLINE]

11:

Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps.

Strong M, Graeber TG, Beeby M, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D.

Nucleic Acids Res. 2003 Dec 15;31(24):7099-109.

PMID: 14654685 [PubMed - indexed for MEDLINE]

12:

Phylogenetic detection of conserved gene clusters in microbial genomes.

Zheng Y, Anton BP, Roberts RJ, Kasif S.

BMC Bioinformatics. 2005 Oct 3;6:243.

PMID: 16202130 [PubMed - indexed for MEDLINE]

13:

Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study.

Podar M, Eads JR, Richardson TH.

BMC Evol Biol. 2005 Aug 6;5:42.

PMID: 16083508 [PubMed - indexed for MEDLINE]

14:

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA.

Nature. 2002 May 9;417(6885):141-7.

PMID: 12000953 [PubMed - indexed for MEDLINE]

15:

Conserved synteny between the Ciona genome and human paralogons identifies large duplication events in the molecular evolution of the insulin-relaxin gene family.

Olinski RP, Lundin LG, Hallböök F.

Mol Biol Evol. 2006 Jan;23(1):10-22. Epub 2005 Aug 31.

PMID: 16135778 [PubMed - indexed for MEDLINE]

16:

The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.

BMC Genomics. 2008 Jun 30;9:313.

PMID: 18590549 [PubMed - indexed for MEDLINE]

17:

SNAPping up functionally related genes based on context information: a colinearity-free approach.

Kolesov G, Mewes HW, Frishman D.

J Mol Biol. 2001 Aug 24;311(4):639-56.

PMID: 11518521 [PubMed - indexed for MEDLINE]

18:

Prediction of functional modules based on comparative genome analysis and Gene Ontology application.

Wu H, Su Z, Mao F, Olman V, Xu Y.

Nucleic Acids Res. 2005 May 18;33(9):2822-37. Print 2005.

PMID: 15901854 [PubMed - indexed for MEDLINE]

19:

GeneViTo: visualizing gene-product functional and structural features in genomic datasets.

Vernikos GS, Gkogkas CG, Promponas VJ, Hamodrakas SJ.

BMC Bioinformatics. 2003 Oct 31;4:53.

PMID: 14594459 [PubMed - indexed for MEDLINE]

20:

Prediction of functional modules based on gene distributions in microbial genomes.

Wu H, Mao F, Su Z, Olman V, Xu Y.

Genome Inform. 2005;16(2):247-59.

PMID: 16901107 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 164
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