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Items 1 - 20 of 115
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1:

Improved analytical methods for microarray-based genome-composition analysis.

Kim CC, Joyce EA, Chan K, Falkow S.

Genome Biol. 2002 Oct 29;3(11):RESEARCH0065. Epub 2002 Oct 29.

PMID: 12429064 [PubMed - indexed for MEDLINE]

2:

A new approach for the analysis of bacterial microarray-based Comparative Genomic Hybridization: insights from an empirical study.

Taboada EN, Acedillo RR, Luebbert CC, Findlay WA, Nash JH.

BMC Genomics. 2005 May 27;6(1):78.

PMID: 15918914 [PubMed - indexed for MEDLINE]

3:

Large-scale comparative genomics meta-analysis of Campylobacter jejuni isolates reveals low level of genome plasticity.

Taboada EN, Acedillo RR, Carrillo CD, Findlay WA, Medeiros DT, Mykytczuk OL, Roberts MJ, Valencia CA, Farber JM, Nash JH.

J Clin Microbiol. 2004 Oct;42(10):4566-76.

PMID: 15472310 [PubMed - indexed for MEDLINE]

4:

Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.

Reneker J, Shyu CR.

BMC Bioinformatics. 2005 May 3;6:111.

PMID: 15869708 [PubMed - indexed for MEDLINE]

5:

Strain-specific genes of Helicobacter pylori: distribution, function and dynamics.

Janssen PJ, Audit B, Ouzounis CA.

Nucleic Acids Res. 2001 Nov 1;29(21):4395-404.

PMID: 11691927 [PubMed - indexed for MEDLINE]

6:

Comparative genome analysis of Campylobacter jejuni using whole genome DNA microarrays.

Pearson BM, Pin C, Wright J, I'Anson K, Humphrey T, Wells JM.

FEBS Lett. 2003 Nov 6;554(1-2):224-30.

PMID: 14596944 [PubMed - indexed for MEDLINE]

7:

CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data.

Anderson BD, Gilson MC, Scott AA, Biehl BS, Glasner JD, Rajashekara G, Splitter GA, Perna NT.

BMC Genomics. 2006 Apr 25;7:91.

PMID: 16638145 [PubMed - indexed for MEDLINE]

8:

Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity.

Dorrell N, Mangan JA, Laing KG, Hinds J, Linton D, Al-Ghusein H, Barrell BG, Parkhill J, Stoker NG, Karlyshev AV, Butcher PD, Wren BW.

Genome Res. 2001 Oct;11(10):1706-15.

PMID: 11591647 [PubMed - indexed for MEDLINE]

9:

A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus.

Charbonnier Y, Gettler B, François P, Bento M, Renzoni A, Vaudaux P, Schlegel W, Schrenzel J.

BMC Genomics. 2005 Jun 17;6:95.

PMID: 15963225 [PubMed - indexed for MEDLINE]

11:

Comparative analysis of four Campylobacterales.

Eppinger M, Baar C, Raddatz G, Huson DH, Schuster SC.

Nat Rev Microbiol. 2004 Nov;2(11):872-85. Review.

PMID: 15494744 [PubMed - indexed for MEDLINE]

12:

Helicobacter pylori genome variability in a framework of familial transmission.

Kivi M, Rodin S, Kupershmidt I, Lundin A, Tindberg Y, Granström M, Engstrand L.

BMC Microbiol. 2007 Jun 11;7:54.

PMID: 17562007 [PubMed - indexed for MEDLINE]

13:

Validation of mixed-genome microarrays as a method for genetic discrimination.

Wan Y, Broschat SL, Call DR.

Appl Environ Microbiol. 2007 Mar;73(5):1425-32. Epub 2007 Jan 5.

PMID: 17209070 [PubMed - indexed for MEDLINE]

14:

Ab initio gene identification: prokaryote genome annotation with GeneScan and GLIMMER.

Aggarwal G, Ramaswamy R.

J Biosci. 2002 Feb;27(1 Suppl 1):7-14.

PMID: 11927773 [PubMed - indexed for MEDLINE]

15:

Data rotation improves genomotyping efficiency.

Repsilber D, Mira A, Lindroos H, Andersson S, Ziegler A.

Biom J. 2005 Aug;47(4):585-98.

PMID: 16161813 [PubMed - indexed for MEDLINE]

16:

Identification of Campylobacter jejuni ATCC 43431-specific genes by whole microbial genome comparisons.

Poly F, Threadgill D, Stintzi A.

J Bacteriol. 2004 Jul;186(14):4781-95.

PMID: 15231810 [PubMed - indexed for MEDLINE]

18:

Detection of deleted genomic DNA using a semiautomated computational analysis of GeneChip data.

Salamon H, Kato-Maeda M, Small PM, Drenkow J, Gingeras TR.

Genome Res. 2000 Dec;10(12):2044-54.

PMID: 11116098 [PubMed - indexed for MEDLINE]

19:

Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

Sásik R, Calvo E, Corbeil J.

Bioinformatics. 2002 Dec;18(12):1633-40.

PMID: 12490448 [PubMed - indexed for MEDLINE]

20:

Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source.

Champion OL, Gaunt MW, Gundogdu O, Elmi A, Witney AA, Hinds J, Dorrell N, Wren BW.

Proc Natl Acad Sci U S A. 2005 Nov 1;102(44):16043-8. Epub 2005 Oct 17.

PMID: 16230626 [PubMed - indexed for MEDLINE]

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