Turn recording back on
Microarray analysis of orthologous genes: conservation of the translational machinery across species at the sequence and expression level.
Jiménez JL, Mitchell MP, Sgouros JG.
Genome Biol. 2003;4(1):R4. Epub 2002 Dec 31.
PMID: 12537549 [PubMed - indexed for MEDLINE]
Related Articles Free article in PMC
Conservation and evolution of cis-regulatory systems in ascomycete fungi.
Gasch AP, Moses AM, Chiang DY, Fraser HB, Berardini M, Eisen MB.
PLoS Biol. 2004 Dec;2(12):e398. Epub 2004 Nov 9.
PMID: 15534694 [PubMed - indexed for MEDLINE]
Integrating genomic data to predict transcription factor binding.
Holloway DT, Kon M, DeLisi C.
Genome Inform. 2005;16(1):83-94.
PMID: 16362910 [PubMed - indexed for MEDLINE]
Related Articles
Sequencing and comparison of yeast species to identify genes and regulatory elements.
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES.
Nature. 2003 May 15;423(6937):241-54.
PMID: 12748633 [PubMed - indexed for MEDLINE]
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks.
Reiss DJ, Baliga NS, Bonneau R.
BMC Bioinformatics. 2006 Jun 2;7:280.
PMID: 16749936 [PubMed - indexed for MEDLINE]
Finding functional features in Saccharomyces genomes by phylogenetic footprinting.
Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, Majors J, Waterston R, Cohen BA, Johnston M.
Science. 2003 Jul 4;301(5629):71-6. Epub 2003 May 29.
PMID: 12775844 [PubMed - indexed for MEDLINE]
Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation.
Cvijović M, Dalevi D, Bilsland E, Kemp GJ, Sunnerhagen P.
BMC Bioinformatics. 2007 Aug 8;8:295.
PMID: 17686169 [PubMed - indexed for MEDLINE]
Integration of known transcription factor binding site information and gene expression data to advance from co-expression to co-regulation.
Clements M, van Someren EP, Knijnenburg TA, Reinders MJ.
Genomics Proteomics Bioinformatics. 2007 May;5(2):86-101.
PMID: 17893074 [PubMed - indexed for MEDLINE]
Discovering regulatory binding-site modules using rule-based learning.
Hvidsten TR, Wilczyński B, Kryshtafovych A, Tiuryn J, Komorowski J, Fidelis K.
Genome Res. 2005 Jun;15(6):856-66.
PMID: 15930496 [PubMed - indexed for MEDLINE]
Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast.
Tanay A, Regev A, Shamir R.
Proc Natl Acad Sci U S A. 2005 May 17;102(20):7203-8. Epub 2005 May 9.
PMID: 15883364 [PubMed - indexed for MEDLINE]
Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering.
Gasch AP, Eisen MB.
Genome Biol. 2002 Oct 10;3(11):RESEARCH0059. Epub 2002 Oct 10.
PMID: 12429058 [PubMed - indexed for MEDLINE]
Comparative analysis of the transcription-factor gene regulatory networks of E. coli and S. cerevisiae.
Guzmán-Vargas L, Santillán M.
BMC Syst Biol. 2008 Jan 31;2:13.
PMID: 18237429 [PubMed - indexed for MEDLINE]
Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes.
Moqtaderi Z, Struhl K.
Mol Cell Biol. 2004 May;24(10):4118-27.
PMID: 15121834 [PubMed - indexed for MEDLINE]
MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states.
Lelandais G, Marc P, Vincens P, Jacq C, Vialette S.
BMC Bioinformatics. 2004 Mar 3;5:20.
PMID: 15053844 [PubMed - indexed for MEDLINE]
Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein.
Raghava GP, Han JH.
BMC Bioinformatics. 2005 Mar 17;6:59.
PMID: 15773999 [PubMed - indexed for MEDLINE]
Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts.
Chiang DY, Moses AM, Kellis M, Lander ES, Eisen MB.
Genome Biol. 2003;4(7):R43. Epub 2003 Jun 26.
PMID: 12844359 [PubMed - indexed for MEDLINE]
Conservation of gene co-regulation in prokaryotes and eukaryotes.
Teichmann SA, Babu MM.
Trends Biotechnol. 2002 Oct;20(10):407-10; discussion 410.
PMID: 12220896 [PubMed - indexed for MEDLINE]
Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast.
Balaji S, Babu MM, Iyer LM, Luscombe NM, Aravind L.
J Mol Biol. 2006 Jun 30;360(1):213-27. Epub 2006 May 3.
PMID: 16762362 [PubMed - indexed for MEDLINE]
Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system.
Tsai HK, Su CP, Lu MY, Shih CH, Wang D.
BMC Genomics. 2007 Oct 3;8:352.
PMID: 17910772 [PubMed - indexed for MEDLINE]
A neural network-based similarity index for clustering DNA microarray data.
Sawa T, Ohno-Machado L.
Comput Biol Med. 2003 Jan;33(1):1-15.
PMID: 12485626 [PubMed - indexed for MEDLINE]