A strategy for oligonucleotide microarray probe reduction.

Antipova AA, Tamayo P, Golub TR.

Genome Biol. 2002;3(12):RESEARCH0073. Epub 2002 Nov 25.

PMID: 12537562 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

A combinational feature selection and ensemble neural network method for classification of gene expression data.

Liu B, Cui Q, Jiang T, Ma S.

BMC Bioinformatics. 2004 Sep 27;5:136.

PMID: 15450124 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Spectral biclustering of microarray data: coclustering genes and conditions.

Kluger Y, Basri R, Chang JT, Gerstein M.

Genome Res. 2003 Apr;13(4):703-16.

PMID: 12671006 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Inter-platform comparability of microarrays in acute lymphoblastic leukemia.

Mitchell SA, Brown KM, Henry MM, Mintz M, Catchpoole D, LaFleur B, Stephan DA.

BMC Genomics. 2004 Sep 23;5(1):71.

PMID: 15387886 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.

Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z.

BMC Bioinformatics. 2005 Apr 25;6:107.

PMID: 15850491 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.

Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.

Theor Biol Med Model. 2006 Apr 7;3:19.

PMID: 16603076 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Iterative class discovery and feature selection using Minimal Spanning Trees.

Varma S, Simon R.

BMC Bioinformatics. 2004 Sep 8;5:126.

PMID: 15355552 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Spotted long oligonucleotide arrays for human gene expression analysis.

Barczak A, Rodriguez MW, Hanspers K, Koth LL, Tai YC, Bolstad BM, Speed TP, Erle DJ.

Genome Res. 2003 Jul;13(7):1775-85. Epub 2003 Jun 12.

PMID: 12805270 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID: 15117752 [PubMed - indexed for MEDLINE]

Related Articles

Gene selection from microarray data for cancer classification--a machine learning approach.

Wang Y, Tetko IV, Hall MA, Frank E, Facius A, Mayer KF, Mewes HW.

Comput Biol Chem. 2005 Feb;29(1):37-46.

PMID: 15680584 [PubMed - indexed for MEDLINE]

Related Articles

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.

Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, Bloomfield CD, Lander ES.

Science. 1999 Oct 15;286(5439):531-7.

PMID: 10521349 [PubMed - indexed for MEDLINE]

Related Articles

A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.

BMC Bioinformatics. 2007 Apr 20;8:132.

PMID: 17448222 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Improving signal intensities for genes with low-expression on oligonucleotide microarrays.

Ramdas L, Cogdell DE, Jia JY, Taylor EE, Dunmire VR, Hu L, Hamilton SR, Zhang W.

BMC Genomics. 2004 Jun 14;5(1):35.

PMID: 15196312 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations.

Wallace JC, Korth MJ, Paeper B, Proll SC, Thomas MJ, Magness CL, Iadonato SP, Nelson C, Katze MG.

BMC Genomics. 2007 Jan 23;8:28.

PMID: 17244361 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

A canine cancer-gene microarray for CGH analysis of tumors.

Thomas R, Fiegler H, Ostrander EA, Galibert F, Carter NP, Breen M.

Cytogenet Genome Res. 2003;102(1-4):254-60.

PMID: 14970712 [PubMed - indexed for MEDLINE]

Related Articles

Support vector machine classification and validation of cancer tissue samples using microarray expression data.

Furey TS, Cristianini N, Duffy N, Bednarski DW, Schummer M, Haussler D.

Bioinformatics. 2000 Oct;16(10):906-14.

PMID: 11120680 [PubMed - indexed for MEDLINE]

Related Articles

Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach.

Zhang J, Finney RP, Clifford RJ, Derr LK, Buetow KH.

Genomics. 2005 Mar;85(3):297-308.

PMID: 15718097 [PubMed - indexed for MEDLINE]

Related Articles

Microarray-based classification of diffuse large B-cell lymphoma.

Poulsen CB, Borup R, Nielsen FC, Borregaard N, Hansen M, Grønbaek K, Møller MB, Ralfkiaer E.

Eur J Haematol. 2005 Jun;74(6):453-65.

PMID: 15876249 [PubMed - indexed for MEDLINE]

Related Articles

Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarrays.

Lu J, Lee JC, Salit ML, Cam MC.

BMC Bioinformatics. 2007 Mar 29;8:108.

PMID: 17394657 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Molecular diagnosis and outcome prediction in diffuse large B-cell lymphoma and other subtypes of lymphoma.

Dybkaer K, Iqbal J, Zhou G, Chan WC.

Clin Lymphoma. 2004 Jun;5(1):19-28. Review.

PMID: 15245604 [PubMed - indexed for MEDLINE]

Related Articles