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Items 1 - 20 of 160
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1:

JEvTrace: refinement and variations of the evolutionary trace in JAVA.

Joachimiak MP, Cohen FE.

Genome Biol. 2002;3(12):RESEARCH0077. Epub 2002 Nov 26.

PMID: 12537566 [PubMed - indexed for MEDLINE]

2:

MultiSeq: unifying sequence and structure data for evolutionary analysis.

Roberts E, Eargle J, Wright D, Luthey-Schulten Z.

BMC Bioinformatics. 2006 Aug 16;7:382.

PMID: 16914055 [PubMed - indexed for MEDLINE]

3:

Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.

La D, Livesay DR.

BMC Bioinformatics. 2005 May 13;6:116.

PMID: 15890082 [PubMed - indexed for MEDLINE]

4:

ET viewer: an application for predicting and visualizing functional sites in protein structures.

Morgan DH, Kristensen DM, Mittelman D, Lichtarge O.

Bioinformatics. 2006 Aug 15;22(16):2049-50. Epub 2006 Jun 29.

PMID: 16809388 [PubMed - indexed for MEDLINE]

5:

Graphical representation of ribosomal RNA probe accessibility data using ARB software package.

Kumar Y, Westram R, Behrens S, Fuchs B, Glöckner FO, Amann R, Meier H, Ludwig W.

BMC Bioinformatics. 2005 Mar 21;6:61.

PMID: 15777482 [PubMed - indexed for MEDLINE]

6:

ZPS: visualization of recent adaptive evolution of proteins.

Chattopadhyay S, Dykhuizen DE, Sokurenko EV.

BMC Bioinformatics. 2007 Jun 7;8:187.

PMID: 17555597 [PubMed - indexed for MEDLINE]

7:

MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution.

Cai JJ, Smith DK, Xia X, Yuen KY.

BMC Bioinformatics. 2005 Mar 22;6:64.

PMID: 15780146 [PubMed - indexed for MEDLINE]

8:

GeneViTo: visualizing gene-product functional and structural features in genomic datasets.

Vernikos GS, Gkogkas CG, Promponas VJ, Hamodrakas SJ.

BMC Bioinformatics. 2003 Oct 31;4:53.

PMID: 14594459 [PubMed - indexed for MEDLINE]

9:

PROMPT: a protein mapping and comparison tool.

Schmidt T, Frishman D.

BMC Bioinformatics. 2006 Jul 4;7:331.

PMID: 16817977 [PubMed - indexed for MEDLINE]

10:

ViTO: tool for refinement of protein sequence-structure alignments.

Catherinot V, Labesse G.

Bioinformatics. 2004 Dec 12;20(18):3694-6. Epub 2004 Jul 22.

PMID: 15271783 [PubMed - indexed for MEDLINE]

11:

Phylo-VISTA: interactive visualization of multiple DNA sequence alignments.

Shah N, Couronne O, Pennacchio LA, Brudno M, Batzoglou S, Bethel EW, Rubin EM, Hamann B, Dubchak I.

Bioinformatics. 2004 Mar 22;20(5):636-43. Epub 2004 Jan 22.

PMID: 15033870 [PubMed - indexed for MEDLINE]

12:

Multiple Alignment of protein structures and sequences for VMD.

Eargle J, Wright D, Luthey-Schulten Z.

Bioinformatics. 2006 Feb 15;22(4):504-6. Epub 2005 Dec 8.

PMID: 16339280 [PubMed - indexed for MEDLINE]

13:

Protein function prediction using the Protein Link EXplorer (PLEX).

Date SV, Marcotte EM.

Bioinformatics. 2005 May 15;21(10):2558-9. Epub 2005 Feb 8.

PMID: 15701682 [PubMed - indexed for MEDLINE]

14:

Bayesian coestimation of phylogeny and sequence alignment.

Lunter G, Miklós I, Drummond A, Jensen JL, Hein J.

BMC Bioinformatics. 2005 Apr 1;6:83.

PMID: 15804354 [PubMed - indexed for MEDLINE]

15:

Protalign: a 3-dimensional protein alignment assessment tool.

Meads D, Hansen MD, Pang A.

Pac Symp Biocomput. 1999:354-67.

PMID: 10380210 [PubMed - indexed for MEDLINE]

16:

ABC: software for interactive browsing of genomic multiple sequence alignment data.

Cooper GM, Singaravelu SA, Sidow A.

BMC Bioinformatics. 2004 Dec 8;5:192.

PMID: 15588288 [PubMed - indexed for MEDLINE]

17:

Sfixem--graphical sequence feature display in Java.

Chalk AM, Wennerberg M, Sonnhammer EL.

Bioinformatics. 2004 Oct 12;20(15):2488-90. Epub 2004 Apr 15.

PMID: 15087316 [PubMed - indexed for MEDLINE]

18:

MAGOS: multiple alignment and modelling server.

Garnier N, Friedrich A, Bolze R, Bettler E, Moulinier L, Geourjon C, Thompson JD, Deléage G, Poch O.

Bioinformatics. 2006 Sep 1;22(17):2164-5. Epub 2006 Jul 4.

PMID: 16820425 [PubMed - indexed for MEDLINE]

19:

Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications.

Zhang H, Huang K, Li Z, Banerjei L, Fisher KE, Grishin NV, Eisenstein E, Herzberg O.

Proteins. 2000 Jul 1;40(1):86-97.

PMID: 10813833 [PubMed - indexed for MEDLINE]

20:

CLANS: a Java application for visualizing protein families based on pairwise similarity.

Frickey T, Lupas A.

Bioinformatics. 2004 Dec 12;20(18):3702-4. Epub 2004 Jul 29.

PMID: 15284097 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 160
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