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Exploiting microarrays to reveal differential gene expression in the nervous system.

Griffin RS, Mills CD, Costigan M, Woolf CJ.

Genome Biol. 2003;4(2):105. Epub 2003 Jan 29.

PMID: 12620110 [PubMed - indexed for MEDLINE]

Neural system-enriched gene expression: relationship to biological pathways and neurological diseases.

Zhang J, Moseley A, Jegga AG, Gupta A, Witte DP, Sartor M, Medvedovic M, Williams SS, Ley-Ebert C, Coolen LM, Egnaczyk G, Genter MB, Lehman M, Lingrel J, Maggio J, Parysek L, Walsh R, Xu M, Aronow BJ.

Physiol Genomics. 2004 Jul 8;18(2):167-83.

PMID: 15126645 [PubMed - indexed for MEDLINE]

Unbiased characterization of high-density oligonucleotide microarrays using probe-level statistics.

Aimone JB, Gage FH.

J Neurosci Methods. 2004 May 30;135(1-2):27-33.

PMID: 15020086 [PubMed - indexed for MEDLINE]

DNA microarrays: vital statistics.

Tilstone C.

Nature. 2003 Aug 7;424(6949):610-2. No abstract available.

PMID: 12904757 [PubMed - indexed for MEDLINE]

Progress in realizing the promise of microarrays in systems neurobiology.

Dougherty JD, Geschwind DH.

Neuron. 2005 Jan 20;45(2):183-5. Review.

PMID: 15664168 [PubMed - indexed for MEDLINE]

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.

PMID: 16551369 [PubMed - indexed for MEDLINE]

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Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.

PMID: 16253343 [PubMed - indexed for MEDLINE]

DNA microarrays: raising the profile.

van Berkum NL, Holstege FC.

Curr Opin Biotechnol. 2001 Feb;12(1):48-52. Review.

PMID: 11167072 [PubMed - indexed for MEDLINE]

Effect of various normalization methods on Applied Biosystems expression array system data.

Barbacioru CC, Wang Y, Canales RD, Sun YA, Keys DN, Chan F, Poulter KA, Samaha RR.

BMC Bioinformatics. 2006 Dec 15;7:533.

PMID: 17173684 [PubMed - indexed for MEDLINE]

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Combining gene expression data from different generations of oligonucleotide arrays.

Hwang KB, Kong SW, Greenberg SA, Park PJ.

BMC Bioinformatics. 2004 Oct 25;5:159.

PMID: 15504239 [PubMed - indexed for MEDLINE]

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Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays.

Auer H, Newsom DL, Nowak NJ, McHugh KM, Singh S, Yu CY, Yang Y, Wenger GD, Gastier-Foster JM, Kornacker K.

BMC Genomics. 2007 Apr 30;8:111.

PMID: 17470268 [PubMed - indexed for MEDLINE]

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Improving reliability and performance of DNA microarrays.

Sievertzon M, Nilsson P, Lundeberg J.

Expert Rev Mol Diagn. 2006 May;6(3):481-92. Review.

PMID: 16706748 [PubMed - indexed for MEDLINE]

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Statistically designing microarrays and microarray experiments to enhance sensitivity and specificity.

Hsu JC, Chang J, Wang T, Steingrímsson E, Magnússon MK, Bergsteinsdottir K.

Brief Bioinform. 2007 Jan;8(1):22-31. Epub 2006 Aug 9.

PMID: 16899493 [PubMed - indexed for MEDLINE]

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Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant.

Vodkin LO, Khanna A, Shealy R, Clough SJ, Gonzalez DO, Philip R, Zabala G, Thibaud-Nissen F, Sidarous M, Strömvik MV, Shoop E, Schmidt C, Retzel E, Erpelding J, Shoemaker RC, Rodriguez-Huete AM, Polacco JC, Coryell V, Keim P, Gong G, Liu L, Pardinas J, Schweitzer P.

BMC Genomics. 2004 Sep 29;5(1):73.

PMID: 15453914 [PubMed - indexed for MEDLINE]

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Normal uniform mixture differential gene expression detection for cDNA microarrays.

Dean N, Raftery AE.

BMC Bioinformatics. 2005 Jul 12;6:173.

PMID: 16011807 [PubMed - indexed for MEDLINE]

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Microarray expression profiling: analysis and applications.

Xiang Z, Yang Y, Ma X, Ding W.