MatchMiner: a tool for batch navigation among gene and gene product identifiers.

Bussey KJ, Kane D, Sunshine M, Narasimhan S, Nishizuka S, Reinhold WC, Zeeberg B, Ajay W, Weinstein JN.

Genome Biol. 2003;4(4):R27. Epub 2003 Mar 25.

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Graphical representation of ribosomal RNA probe accessibility data using ARB software package.

Kumar Y, Westram R, Behrens S, Fuchs B, Glöckner FO, Amann R, Meier H, Ludwig W.

BMC Bioinformatics. 2005 Mar 21;6:61.

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MILANO--custom annotation of microarray results using automatic literature searches.

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BMC Bioinformatics. 2005 Jan 20;6:12.

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HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data.

Trivedi P, Edwards JW, Wang J, Gadbury GL, Srinivasasainagendra V, Zakharkin SO, Kim K, Mehta T, Brand JP, Patki A, Page GP, Allison DB.

BMC Bioinformatics. 2005 Apr 6;6:86.

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GeneCruiser: a web service for the annotation of microarray data.

Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP.

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Maurer M, Molidor R, Sturn A, Hartler J, Hackl H, Stocker G, Prokesch A, Scheideler M, Trajanoski Z.

BMC Bioinformatics. 2005 Apr 18;6:101.

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CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

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The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface.

Chen J, Zhao P, Massaro D, Clerch LB, Almon RR, DuBois DC, Jusko WJ, Hoffman EP.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D578-81.

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GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.

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chip artifact CORRECTion (caCORRECT): a bioinformatics system for quality assurance of genomics and proteomics array data.

Stokes TH, Moffitt RA, Phan JH, Wang MD.

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Menten B, Pattyn F, De Preter K, Robbrecht P, Michels E, Buysse K, Mortier G, De Paepe A, van Vooren S, Vermeesch J, Moreau Y, De Moor B, Vermeulen S, Speleman F, Vandesompele J.

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A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus.

Charbonnier Y, Gettler B, François P, Bento M, Renzoni A, Vaudaux P, Schlegel W, Schrenzel J.

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FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data.

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Update of the G2D tool for prioritization of gene candidates to inherited diseases.

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Development of gene ontology tool for biological interpretation of genomic and proteomic data.

Feng W, Wang G, Zeeberg BR, Guo K, Fojo AT, Kane DW, Reinhold WC, Lababidi S, Weinstein JN, Wang MD.

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GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining.

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Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.

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