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Items 1 - 20 of 109
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1:

Beyond 100 genomes.

Janssen P, Audit B, Cases I, Darzentas N, Goldovsky L, Kunin V, Lopez-Bigas N, Peregrin-Alvarez JM, Pereira-Leal JB, Tsoka S, Ouzounis CA.

Genome Biol. 2003;4(5):402. Epub 2003 Apr 28.

PMID: 12734008 [PubMed - indexed for MEDLINE]

2:

Recent developments and future directions in computational genomics.

Tsoka S, Ouzounis CA.

FEBS Lett. 2000 Aug 25;480(1):42-8. Review.

PMID: 10967327 [PubMed - indexed for MEDLINE]

3:

Evolutionary sequence analysis of complete eukaryote genomes.

Blair JE, Shah P, Hedges SB.

BMC Bioinformatics. 2005 Mar 11;6:53.

PMID: 15762985 [PubMed - indexed for MEDLINE]

4:

Advances in structural genomics.

Teichmann SA, Chothia C, Gerstein M.

Curr Opin Struct Biol. 1999 Jun;9(3):390-9. Review.

PMID: 10361097 [PubMed - indexed for MEDLINE]

5:

Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences.

Auch AF, Henz SR, Holland BR, Göker M.

BMC Bioinformatics. 2006 Jul 19;7:350.

PMID: 16854218 [PubMed - indexed for MEDLINE]

6:

Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery.

Ofran Y, Punta M, Schneider R, Rost B.

Drug Discov Today. 2005 Nov 1;10(21):1475-82. Review.

PMID: 16243268 [PubMed - indexed for MEDLINE]

7:

GANESH: software for customized annotation of genome regions.

Huntley D, Hummerich H, Smedley D, Kittivoravitkul S, McCarthy M, Little P, Sergot M.

Genome Res. 2003 Sep;13(9):2195-202.

PMID: 12952886 [PubMed - indexed for MEDLINE]

8:

Bioinformatics in the post-genome era.

Yu U, Lee SH, Kim YJ, Kim S.

J Biochem Mol Biol. 2004 Jan 31;37(1):75-82. Review.

PMID: 14761305 [PubMed - indexed for MEDLINE]

9:

Methods for obtaining and analyzing whole chloroplast genome sequences.

Jansen RK, Raubeson LA, Boore JL, dePamphilis CW, Chumley TW, Haberle RC, Wyman SK, Alverson AJ, Peery R, Herman SJ, Fourcade HM, Kuehl JV, McNeal JR, Leebens-Mack J, Cui L.

Methods Enzymol. 2005;395:348-84.

PMID: 15865976 [PubMed - indexed for MEDLINE]

10:

Alignments of mitochondrial genome arrangements: applications to metazoan phylogeny.

Fritzsch G, Schlegel M, Stadler PF.

J Theor Biol. 2006 Jun 21;240(4):511-20. Epub 2005 Dec 1.

PMID: 16325206 [PubMed - indexed for MEDLINE]

11:

What lies beyond bioinformatics?

Palsson BO.

Nat Biotechnol. 1997 Jan;15(1):3-4. No abstract available.

PMID: 9035092 [PubMed - indexed for MEDLINE]

12:

Computing protein function.

Teichmann SA, Mitchison G.

Nat Biotechnol. 2000 Jan;18(1):27. No abstract available.

PMID: 10625385 [PubMed - indexed for MEDLINE]

13:

Genome phylogenetic analysis based on extended gene contents.

Gu X, Zhang H.

Mol Biol Evol. 2004 Jul;21(7):1401-8. Epub 2004 Apr 14.

PMID: 15084675 [PubMed - indexed for MEDLINE]

14:

Recent developments in computational approaches for uncovering genomic homology.

Simillion C, Vandepoele K, Van de Peer Y.

Bioessays. 2004 Nov;26(11):1225-35. Review.

PMID: 15499578 [PubMed - indexed for MEDLINE]

15:

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

PMID: 14759257 [PubMed - indexed for MEDLINE]

16:

Computational approaches to unveiling ancient genome duplications.

Van de Peer Y.

Nat Rev Genet. 2004 Oct;5(10):752-63. Review.

PMID: 15510166 [PubMed - indexed for MEDLINE]

17:

Large-scale trends in the evolution of gene structures within 11 animal genomes.

Yandell M, Mungall CJ, Smith C, Prochnik S, Kaminker J, Hartzell G, Lewis S, Rubin GM.

PLoS Comput Biol. 2006 Mar;2(3):e15. Epub 2006 Mar 3.

PMID: 16518452 [PubMed - indexed for MEDLINE]

18:

A novel approach to identifying regulatory motifs in distantly related genomes.

Van Hellemont R, Monsieurs P, Thijs G, de Moor B, Van de Peer Y, Marchal K.

Genome Biol. 2005;6(13):R113. Epub 2005 Dec 30.

PMID: 16420672 [PubMed - indexed for MEDLINE]

19:

Phylogenetic profiles for the prediction of protein-protein interactions: how to select reference organisms?

Sun J, Li Y, Zhao Z.

Biochem Biophys Res Commun. 2007 Feb 23;353(4):985-91. Epub 2006 Dec 27.

PMID: 17207465 [PubMed - indexed for MEDLINE]

20:

The complete mitochondrial genome of the stomatopod crustacean Squilla mantis.

Cook CE.

BMC Genomics. 2005 Aug 9;6:105.

PMID: 16091132 [PubMed - indexed for MEDLINE]

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