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1:

The Neurospora crassa genome opens up the world of filamentous fungi.

Hynes MJ.

Genome Biol. 2003;4(6):217. Epub 2003 May 28. Review.

PMID: 12801405 [PubMed - indexed for MEDLINE]

2:

The genome sequence of the filamentous fungus Neurospora crassa.

Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B.

Nature. 2003 Apr 24;422(6934):859-68.

PMID: 12712197 [PubMed - indexed for MEDLINE]

3:

Large-scale comparison of fungal sequence information: mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae.

Braun EL, Halpern AL, Nelson MA, Natvig DO.

Genome Res. 2000 Apr;10(4):416-30.

PMID: 10779483 [PubMed - indexed for MEDLINE]

4:

RIP: the evolutionary cost of genome defense.

Galagan JE, Selker EU.

Trends Genet. 2004 Sep;20(9):417-23. Review.

PMID: 15313550 [PubMed - indexed for MEDLINE]

5:

What's in the genome of a filamentous fungus? Analysis of the Neurospora genome sequence.

Mannhaupt G, Montrone C, Haase D, Mewes HW, Aign V, Hoheisel JD, Fartmann B, Nyakatura G, Kempken F, Maier J, Schulte U.

Nucleic Acids Res. 2003 Apr 1;31(7):1944-54.

PMID: 12655011 [PubMed - indexed for MEDLINE]

6:

Expressed sequences from conidial, mycelial, and sexual stages of Neurospora crassa.

Nelson MA, Kang S, Braun EL, Crawford ME, Dolan PL, Leonard PM, Mitchell J, Armijo AM, Bean L, Blueyes E, Cushing T, Errett A, Fleharty M, Gorman M, Judson K, Miller R, Ortega J, Pavlova I, Perea J, Todisco S, Trujillo R, Valentine J, Wells A, Werner-Washburne M, Natvig DO, et al.

Fungal Genet Biol. 1997 Jun;21(3):348-63.

PMID: 9290248 [PubMed - indexed for MEDLINE]

7:

Evolution of a large ribosomal RNA multigene family in filamentous fungi: birth and death of a concerted evolution paradigm.

Rooney AP, Ward TJ.

Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):5084-9. Epub 2005 Mar 22.

PMID: 15784739 [PubMed - indexed for MEDLINE]

8:

Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism.

Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Seiler S, Bell-Pedersen D, Paietta J, Plesofsky N, Plamann M, Goodrich-Tanrikulu M, Schulte U, Mannhaupt G, Nargang FE, Radford A, Selitrennikoff C, Galagan JE, Dunlap JC, Loros JJ, Catcheside D, Inoue H, Aramayo R, Polymenis M, Selker EU, Sachs MS, Marzluf GA, Paulsen I, Davis R, Ebbole DJ, Zelter A, Kalkman ER, O'Rourke R, Bowring F, Yeadon J, Ishii C, Suzuki K, Sakai W, Pratt R.

Microbiol Mol Biol Rev. 2004 Mar;68(1):1-108. Review.

PMID: 15007097 [PubMed - indexed for MEDLINE]

9:

Blueprint of a red mould: Unusual and unexpected findings in the Neurospora genome sequence.

Kasbekar DP.

J Biosci. 2003 Jun;28(4):361-2. Review. No abstract available.

PMID: 12799481 [PubMed - indexed for MEDLINE]

10:

Large scale analysis of sequences from Neurospora crassa.

Schulte U, Becker I, Mewes HW, Mannhaupt G.

J Biotechnol. 2002 Mar 14;94(1):3-13. Review.

PMID: 11792448 [PubMed - indexed for MEDLINE]

11:

The genome sequence of the model ascomycete fungus Podospora anserina.

Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM, Couloux A, Aury JM, Ségurens B, Poulain J, Anthouard V, Grossetete S, Khalili H, Coppin E, Déquard-Chablat M, Picard M, Contamine V, Arnaise S, Bourdais A, Berteaux-Lecellier V, Gautheret D, de Vries RP, Battaglia E, Coutinho PM, Danchin EG, Henrissat B, Khoury RE, Sainsard-Chanet A, Boivin A, Pinan-Lucarré B, Sellem CH, Debuchy R, Wincker P, Weissenbach J, Silar P.

Genome Biol. 2008;9(5):R77. Epub 2008 May 6.

PMID: 18460219 [PubMed - indexed for MEDLINE]

12:

Vegetative incompatibility in filamentous fungi: a roundabout way of understanding the phenomenon.

Loubradou G, Turcq B.

Res Microbiol. 2000 May;151(4):239-45. Review.

PMID: 10875280 [PubMed - indexed for MEDLINE]

13:

The methylated component of the Neurospora crassa genome.

Selker EU, Tountas NA, Cross SH, Margolin BS, Murphy JG, Bird AP, Freitag M.

Nature. 2003 Apr 24;422(6934):893-7.

PMID: 12712205 [PubMed - indexed for MEDLINE]

14:

The presence of GC-AG introns in Neurospora crassa and other euascomycetes determined from analyses of complete genomes: implications for automated gene prediction.

Rep M, Duyvesteijn RG, Gale L, Usgaard T, Cornelissen BJ, Ma LJ, Ward TJ.

Genomics. 2006 Mar;87(3):338-47. Epub 2006 Jan 9.

PMID: 16406724 [PubMed - indexed for MEDLINE]

15:

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina.

Arvas M, Kivioja T, Mitchell A, Saloheimo M, Ussery D, Penttila M, Oliver S.

BMC Genomics. 2007 Sep 17;8:325.

PMID: 17868481 [PubMed - indexed for MEDLINE]

16:

Studies on fungal Pumilio gene family through mining multiple genome-scale data sets.

Matsushima Y, Sugiura R, Kuno T.

Kobe J Med Sci. 2007;53(4):163-9.

PMID: 17932456 [PubMed - indexed for MEDLINE]

17:

The genetics of nuclear migration in fungi.

Beckwith SM, Roghi CH, Morris NR.

Genet Eng (N Y). 1995;17:165-80. Review. No abstract available.

PMID: 7779511 [PubMed - indexed for MEDLINE]

18:

Analysis of the pdx-1 (snz-1/sno-1) region of the Neurospora crassa genome: correlation of pyridoxine-requiring phenotypes with mutations in two structural genes.

Bean LE, Dvorachek WH Jr, Braun EL, Errett A, Saenz GS, Giles MD, Werner-Washburne M, Nelson MA, Natvig DO.

Genetics. 2001 Mar;157(3):1067-75.

PMID: 11238395 [PubMed - indexed for MEDLINE]

19:

Guest, a transposable element belonging to the Tc1/mariner superfamily is an ancient invader of Neurospora genomes.

Ramussen JP, Taylor AH, Ma LJ, Purcell S, Kempken F, Catcheside DE.

Fungal Genet Biol. 2004 Jan;41(1):52-61.

PMID: 14643259 [PubMed - indexed for MEDLINE]

20:

High-density detection of restriction-site-associated DNA markers for rapid mapping of mutated loci in Neurospora.

Lewis ZA, Shiver AL, Stiffler N, Miller MR, Johnson EA, Selker EU.

Genetics. 2007 Oct;177(2):1163-71. Epub 2007 Jul 29.

PMID: 17660537 [PubMed - indexed for MEDLINE]

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