Translating genome sequences into biological understanding.

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Genome Biol. 2003;4(6):324. Epub 2003 May 23. No abstract available.

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Comparison of complete nuclear receptor sets from the human, Caenorhabditis elegans and Drosophila genomes.

Maglich JM, Sluder A, Guan X, Shi Y, McKee DD, Carrick K, Kamdar K, Willson TM, Moore JT.

Genome Biol. 2001;2(8):RESEARCH0029. Epub 2001 Jul 24.

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C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions.

Lamesch P, Milstein S, Hao T, Rosenberg J, Li N, Sequerra R, Bosak S, Doucette-Stamm L, Vandenhaute J, Hill DE, Vidal M.

Genome Res. 2004 Oct;14(10B):2064-9.

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The use of Open Reading frame ESTs (ORESTES) for analysis of the honey bee transcriptome.

Nunes FM, Valente V, Sousa JF, Cunha MA, Pinheiro DG, Maia RM, Araujo DD, Costa MC, Martins WK, Carvalho AF, Monesi N, Nascimento AM, Peixoto PM, Silva MF, Ramos RG, Reis LF, Dias-Neto E, Souza SJ, Simpson AJ, Zago MA, Soares AE, Bitondi MM, Espreafico EM, Espindola FS, Paco-Larson ML, Simoes ZL, Hartfelder K, Silva WA Jr.

BMC Genomics. 2004 Nov 3;5(1):84.

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Distinct regulatory elements mediate similar expression patterns in the excretory cell of Caenorhabditis elegans.

Zhao Z, Fang L, Chen N, Johnsen RC, Stein L, Baillie DL.

J Biol Chem. 2005 Nov 18;280(46):38787-94. Epub 2005 Sep 13.

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Boutros M, Kiger AA, Armknecht S, Kerr K, Hild M, Koch B, Haas SA, Paro R, Perrimon N; Heidelberg Fly Array Consortium.

Science. 2004 Feb 6;303(5659):832-5.

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Yoshihama M, Uechi T, Asakawa S, Kawasaki K, Kato S, Higa S, Maeda N, Minoshima S, Tanaka T, Shimizu N, Kenmochi N.

Genome Res. 2002 Mar;12(3):379-90.

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Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans.

Murphy CT, McCarroll SA, Bargmann CI, Fraser A, Kamath RS, Ahringer J, Li H, Kenyon C.

Nature. 2003 Jul 17;424(6946):277-83. Epub 2003 Jun 29.

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Homotypic regulatory clusters in Drosophila.

Lifanov AP, Makeev VJ, Nazina AG, Papatsenko DA.

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Gene finding in novel genomes.

Korf I.

BMC Bioinformatics. 2004 May 14;5:59.

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Spiralians in the limelight.

Arendt D.

Genome Biol. 2003;5(1):303. Epub 2003 Dec 19. No abstract available.

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Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster.

Tupy JL, Bailey AM, Dailey G, Evans-Holm M, Siebel CW, Misra S, Celniker SE, Rubin GM.

Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5495-500. Epub 2005 Apr 4. Erratum in: Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8392.

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Mystery of intron gain.

Fedorov A, Roy S, Fedorova L, Gilbert W.

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The regulatory content of intergenic DNA shapes genome architecture.

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MicroRNA targets in Drosophila.

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