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Items 1 - 20 of 345
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1:

Recent segmental and gene duplications in the mouse genome.

Cheung J, Wilson MD, Zhang J, Khaja R, MacDonald JR, Heng HH, Koop BF, Scherer SW.

Genome Biol. 2003;4(8):R47. Epub 2003 Jul 9.

PMID: 12914656 [PubMed - indexed for MEDLINE]

2:

Recent segmental duplications in the working draft assembly of the brown Norway rat.

Tuzun E, Bailey JA, Eichler EE.

Genome Res. 2004 Apr;14(4):493-506.

PMID: 15059990 [PubMed - indexed for MEDLINE]

3:

Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence.

Cheung J, Estivill X, Khaja R, MacDonald JR, Lau K, Tsui LC, Scherer SW.

Genome Biol. 2003;4(4):R25. Epub 2003 Mar 17.

PMID: 12702206 [PubMed - indexed for MEDLINE]

4:

Segmental duplications: organization and impact within the current human genome project assembly.

Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE.

Genome Res. 2001 Jun;11(6):1005-17.

PMID: 11381028 [PubMed - indexed for MEDLINE]

5:

Analysis of segmental duplications and genome assembly in the mouse.

Bailey JA, Church DM, Ventura M, Rocchi M, Eichler EE.

Genome Res. 2004 May;14(5):789-801.

PMID: 15123579 [PubMed - indexed for MEDLINE]

6:

Shotgun sequence assembly and recent segmental duplications within the human genome.

She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, Halpern AL, Eichler EE.

Nature. 2004 Oct 21;431(7011):927-30.

PMID: 15496912 [PubMed - indexed for MEDLINE]

7:

Segmental duplication density decrease with distance to human-mouse breaks of synteny.

Sainz J, Rovensky P, Gudjonsson SA, Thorleifsson G, Stefansson K, Gulcher JR.

Eur J Hum Genet. 2006 Feb;14(2):216-21.

PMID: 16306878 [PubMed - indexed for MEDLINE]

8:

Human-specific duplication and mosaic transcripts: the recent paralogous structure of chromosome 22.

Bailey JA, Yavor AM, Viggiano L, Misceo D, Horvath JE, Archidiacono N, Schwartz S, Rocchi M, Eichler EE.

Am J Hum Genet. 2002 Jan;70(1):83-100. Epub 2001 Nov 30.

PMID: 11731936 [PubMed - indexed for MEDLINE]

9:

Computational comparison of two mouse draft genomes and the human golden path.

Xuan Z, Wang J, Zhang MQ.

Genome Biol. 2003;4(1):R1. Epub 2002 Dec 5.

PMID: 12537546 [PubMed - indexed for MEDLINE]

10:

Patterns of segmental duplication in the human genome.

Zhang L, Lu HH, Chung WY, Yang J, Li WH.

Mol Biol Evol. 2005 Jan;22(1):135-41. Epub 2004 Sep 15.

PMID: 15371527 [PubMed - indexed for MEDLINE]

11:

Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements.

Armengol L, Pujana MA, Cheung J, Scherer SW, Estivill X.

Hum Mol Genet. 2003 Sep 1;12(17):2201-8. Epub 2003 Jul 8.

PMID: 12915466 [PubMed - indexed for MEDLINE]

13:

Recent segmental duplications in the human genome.

Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE.

Science. 2002 Aug 9;297(5583):1003-7.

PMID: 12169732 [PubMed - indexed for MEDLINE]

14:

Complex evolution of 7E olfactory receptor genes in segmental duplications.

Newman T, Trask BJ.

Genome Res. 2003 May;13(5):781-93. Erratum in: Genome Res. 2006 Apr;16(4):557.

PMID: 12727898 [PubMed - indexed for MEDLINE]

15:

The sequence of the human genome.

Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X.

Science. 2001 Feb 16;291(5507):1304-51. Erratum in: Science 2001 Jun 5;292(5523):1838.

PMID: 11181995 [PubMed - indexed for MEDLINE]

17:

Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p.

Guy J, Hearn T, Crosier M, Mudge J, Viggiano L, Koczan D, Thiesen HJ, Bailey JA, Horvath JE, Eichler EE, Earthrowl ME, Deloukas P, French L, Rogers J, Bentley D, Jackson MS.

Genome Res. 2003 Feb;13(2):159-72.

PMID: 12566394 [PubMed - indexed for MEDLINE]

18:

Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence.

Taudien S, Galgoczy P, Huse K, Reichwald K, Schilhabel M, Szafranski K, Shimizu A, Asakawa S, Frankish A, Loncarevic IF, Shimizu N, Siddiqui R, Platzer M.

BMC Genomics. 2004 Dec 10;5(1):92.

PMID: 15588320 [PubMed - indexed for MEDLINE]

19:

Methods for identifying and mapping recent segmental and gene duplications in eukaryotic genomes.

Khaja R, MacDonald JR, Zhang J, Scherer SW.

Methods Mol Biol. 2006;338:9-20.

PMID: 16888347 [PubMed - indexed for MEDLINE]

20:

Molecular evidence for asymmetric evolution of sister duplicated blocks after cereal polyploidy.

Wang H, Yu L, Lai F, Liu L, Wang J.

Plant Mol Biol. 2005 Sep;59(1):63-74.

PMID: 16217602 [PubMed - indexed for MEDLINE]

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