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Items 1 - 20 of 139
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1:

A high performance test of differential gene expression for oligonucleotide arrays.

Lemon WJ, Liyanarachchi S, You M.

Genome Biol. 2003;4(10):R67. Epub 2003 Sep 10.

PMID: 14519202 [PubMed - indexed for MEDLINE]

2:

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID: 15117752 [PubMed - indexed for MEDLINE]

3:

How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results.

Millenaar FF, Okyere J, May ST, van Zanten M, Voesenek LA, Peeters AJ.

BMC Bioinformatics. 2006 Mar 15;7:137.

PMID: 16539732 [PubMed - indexed for MEDLINE]

4:

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application.

Li C, Hung Wong W.

Genome Biol. 2001;2(8):RESEARCH0032. Epub 2001 Aug 3.

PMID: 11532216 [PubMed - indexed for MEDLINE]

5:

Contrast normalization of oligonucleotide arrays.

Astrand M.

J Comput Biol. 2003;10(1):95-102.

PMID: 12676053 [PubMed - indexed for MEDLINE]

6:

Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP.

Biostatistics. 2003 Apr;4(2):249-64.

PMID: 12925520 [PubMed - indexed for MEDLINE]

7:

An expression index for Affymetrix GeneChips based on the generalized logarithm.

Zhou L, Rocke DM.

Bioinformatics. 2005 Nov 1;21(21):3983-9. Epub 2005 Sep 13.

PMID: 16159924 [PubMed - indexed for MEDLINE]

8:

Normality of oligonucleotide microarray data and implications for parametric statistical analyses.

Giles PJ, Kipling D.

Bioinformatics. 2003 Nov 22;19(17):2254-62.

PMID: 14630654 [PubMed - indexed for MEDLINE]

9:

A benchmark for Affymetrix GeneChip expression measures.

Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP.

Bioinformatics. 2004 Feb 12;20(3):323-31.

PMID: 14960458 [PubMed - indexed for MEDLINE]

10:

Summaries of Affymetrix GeneChip probe level data.

Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP.

Nucleic Acids Res. 2003 Feb 15;31(4):e15.

PMID: 12582260 [PubMed - indexed for MEDLINE]

11:

Normalization and quantification of differential expression in gene expression microarrays.

Steinhoff C, Vingron M.

Brief Bioinform. 2006 Jun;7(2):166-77. Epub 2006 Mar 7. Review.

PMID: 16772260 [PubMed - indexed for MEDLINE]

12:

DNMAD: web-based diagnosis and normalization for microarray data.

Vaquerizas JM, Dopazo J, Díaz-Uriarte R.

Bioinformatics. 2004 Dec 12;20(18):3656-8. Epub 2004 Jul 9.

PMID: 15247094 [PubMed - indexed for MEDLINE]

13:

Match-only integral distribution (MOID) algorithm for high-density oligonucleotide array analysis.

Zhou Y, Abagyan R.

BMC Bioinformatics. 2002;3:3. Epub 2002 Jan 22.

PMID: 11835687 [PubMed - indexed for MEDLINE]

14:

A comparison of match-only algorithms for the analysis of Plasmodium falciparum oligonucleotide arrays.

Simpson KM, Baum J, Good RT, Winzeler EA, Cowman AF, Speed TP.

Int J Parasitol. 2005 Apr 30;35(5):523-31.

PMID: 15826644 [PubMed - indexed for MEDLINE]

15:

A comparison of statistical methods for analysis of high density oligonucleotide array data.

Rajagopalan D.

Bioinformatics. 2003 Aug 12;19(12):1469-76.

PMID: 12912826 [PubMed - indexed for MEDLINE]

16:

Inter-platform comparability of microarrays in acute lymphoblastic leukemia.

Mitchell SA, Brown KM, Henry MM, Mintz M, Catchpoole D, LaFleur B, Stephan DA.

BMC Genomics. 2004 Sep 23;5(1):71.

PMID: 15387886 [PubMed - indexed for MEDLINE]

17:

Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data.

Schadt EE, Li C, Ellis B, Wong WH.

J Cell Biochem Suppl. 2001;Suppl 37:120-5.

PMID: 11842437 [PubMed - indexed for MEDLINE]

18:

Joint estimation of calibration and expression for high-density oligonucleotide arrays.

Oberg AL, Mahoney DW, Ballman KV, Therneau TM.

Bioinformatics. 2006 Oct 1;22(19):2381-7. Epub 2006 Jul 28.

PMID: 16877757 [PubMed - indexed for MEDLINE]

19:

An interactive power analysis tool for microarray hypothesis testing and generation.

Seo J, Gordish-Dressman H, Hoffman EP.

Bioinformatics. 2006 Apr 1;22(7):808-14. Epub 2006 Jan 17.

PMID: 16418236 [PubMed - indexed for MEDLINE]

20:

The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies.

Verhaak RG, Staal FJ, Valk PJ, Lowenberg B, Reinders MJ, de Ridder D.

BMC Bioinformatics. 2006 Mar 2;7:105.

PMID: 16512908 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 139
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