An integrated database of genes responsive to the Myc oncogenic transcription factor: identification of direct genomic targets.

Zeller KI, Jegga AG, Aronow BJ, O'Donnell KA, Dang CV.

Genome Biol. 2003;4(10):R69. Epub 2003 Sep 11.

PMID: 14519204 [PubMed - indexed for MEDLINE]

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Evaluation of myc E-box phylogenetic footprints in glycolytic genes by chromatin immunoprecipitation assays.

Kim JW, Zeller KI, Wang Y, Jegga AG, Aronow BJ, O'Donnell KA, Dang CV.

Mol Cell Biol. 2004 Jul;24(13):5923-36.

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Characterization of nucleophosmin (B23) as a Myc target by scanning chromatin immunoprecipitation.

Zeller KI, Haggerty TJ, Barrett JF, Guo Q, Wonsey DR, Dang CV.

J Biol Chem. 2001 Dec 21;276(51):48285-91. Epub 2001 Oct 16.

PMID: 11604407 [PubMed - indexed for MEDLINE]

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A strategy for identifying transcription factor binding sites reveals two classes of genomic c-Myc target sites.

Haggerty TJ, Zeller KI, Osthus RC, Wonsey DR, Dang CV.

Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5313-8. Epub 2003 Apr 17.

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In silico identification of transcriptional regulators associated with c-Myc.

Elkon R, Zeller KI, Linhart C, Dang CV, Shamir R, Shiloh Y.

Nucleic Acids Res. 2004 Sep 23;32(17):4955-61. Print 2004.

PMID: 15388797 [PubMed - indexed for MEDLINE]

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A computerized database-scan to identify c-MYC targets.

Schuldiner O, Shor S, Benvenisty N.

Gene. 2002 Jun 12;292(1-2):91-9.

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Identification of novel Myc target genes with a potential role in lymphomagenesis.

Marinkovic D, Marinkovic T, Kokai E, Barth T, Möller P, Wirth T.

Nucleic Acids Res. 2004 Oct 11;32(18):5368-78. Print 2004.

PMID: 15477387 [PubMed - indexed for MEDLINE]

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Integration of genome and chromatin structure with gene expression profiles to predict c-MYC recognition site binding and function.

Chen Y, Blackwell TW, Chen J, Gao J, Lee AW, States DJ.

PLoS Comput Biol. 2007 Apr 6;3(4):e63.

PMID: 17411336 [PubMed - indexed for MEDLINE]

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Global mapping of c-Myc binding sites and target gene networks in human B cells.

Zeller KI, Zhao X, Lee CW, Chiu KP, Yao F, Yustein JT, Ooi HS, Orlov YL, Shahab A, Yong HC, Fu Y, Weng Z, Kuznetsov VA, Sung WK, Ruan Y, Dang CV, Wei CL.

Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17834-9. Epub 2006 Nov 8.

PMID: 17093053 [PubMed - indexed for MEDLINE]

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Genomic targets of the human c-Myc protein.

Fernandez PC, Frank SR, Wang L, Schroeder M, Liu S, Greene J, Cocito A, Amati B.

Genes Dev. 2003 May 1;17(9):1115-29. Epub 2003 Apr 14.

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Genomic binding and transcriptional regulation by the Drosophila Myc and Mnt transcription factors.

Orian A, Grewal SS, Knoepfler PS, Edgar BA, Parkhurst SM, Eisenman RN.

Cold Spring Harb Symp Quant Biol. 2005;70:299-307.

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Direct activation of RNA polymerase III transcription by c-Myc.

Gomez-Roman N, Grandori C, Eisenman RN, White RJ.

Nature. 2003 Jan 16;421(6920):290-4.

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c-Myc creates an activation loop by transcriptionally repressing its own functional inhibitor, hMad4, in young fibroblasts, a loop lost in replicatively senescent fibroblasts.

Marcotte R, Chen JM, Huard S, Wang E.

J Cell Biochem. 2005 Dec 1;96(5):1071-85.

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Myc target transcriptomes.

Lee LA, Dang CV.

Curr Top Microbiol Immunol. 2006;302:145-67. Review.

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Genomic approaches that aid in the identification of transcription factor target genes.

Kirmizis A, Farnham PJ.

Exp Biol Med (Maywood). 2004 Sep;229(8):705-21. Review.

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Analysis of Myc bound loci identified by CpG island arrays shows that Max is essential for Myc-dependent repression.

Mao DY, Watson JD, Yan PS, Barsyte-Lovejoy D, Khosravi F, Wong WW, Farnham PJ, Huang TH, Penn LZ.

Curr Biol. 2003 May 13;13(10):882-6.

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The c-Myc target gene network.

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Semin Cancer Biol. 2006 Aug;16(4):253-64. Epub 2006 Jul 25. Review.

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The platelet-derived growth factor controls c-myc expression through a JNK- and AP-1-dependent signaling pathway.

Iavarone C, Catania A, Marinissen MJ, Visconti R, Acunzo M, Tarantino C, Carlomagno MS, Bruni CB, Gutkind JS, Chiariello M.

J Biol Chem. 2003 Dec 12;278(50):50024-30. Epub 2003 Sep 30.

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In vivo transcriptional regulation of N-Myc target genes is controlled by E-box methylation.

Perini G, Diolaiti D, Porro A, Della Valle G.

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Transcription-independent functions of MYC: regulation of translation and DNA replication.

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Nat Rev Mol Cell Biol. 2008 Oct;9(10):810-5. Epub 2008 Aug 13. Review.

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