Your browser version may not work well with NCBI's Web applications. More information here...

Recent Activity

Items 1 - 20 of 154
of 8Next
1:

Identifying biological themes within lists of genes with EASE.

Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA.

Genome Biol. 2003;4(10):R70. Epub 2003 Sep 11.

PMID: 14519205 [PubMed - indexed for MEDLINE]

2:

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID: 15661078 [PubMed - indexed for MEDLINE]

3:

Development of gene ontology tool for biological interpretation of genomic and proteomic data.

Feng W, Wang G, Zeeberg BR, Guo K, Fojo AT, Kane DW, Reinhold WC, Lababidi S, Weinstein JN, Wang MD.

AMIA Annu Symp Proc. 2003:839.

PMID: 14728344 [PubMed - indexed for MEDLINE]

4:

PubMatrix: a tool for multiplex literature mining.

Becker KG, Hosack DA, Dennis G Jr, Lempicki RA, Bright TJ, Cheadle C, Engel J.

BMC Bioinformatics. 2003 Dec 10;4:61.

PMID: 14667255 [PubMed - indexed for MEDLINE]

5:

GeneTrail--advanced gene set enrichment analysis.

Backes C, Keller A, Kuentzer J, Kneissl B, Comtesse N, Elnakady YA, Müller R, Meese E, Lenhof HP.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W186-92. Epub 2007 May 25.

PMID: 17526521 [PubMed - indexed for MEDLINE]

6:

List of lists-annotated (LOLA): a database for annotation and comparison of published microarray gene lists.

Cahan P, Ahmad AM, Burke H, Fu S, Lai Y, Florea L, Dharker N, Kobrinski T, Kale P, McCaffrey TA.

Gene. 2005 Oct 24;360(1):78-82. Epub 2005 Sep 2. Review.

PMID: 16140476 [PubMed - indexed for MEDLINE]

7:

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists.

Huang da W, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC, Lempicki RA.

Genome Biol. 2007;8(9):R183.

PMID: 17784955 [PubMed - indexed for MEDLINE]

8:

GoMiner: a resource for biological interpretation of genomic and proteomic data.

Zeeberg BR, Feng W, Wang G, Wang MD, Fojo AT, Sunshine M, Narasimhan S, Kane DW, Reinhold WC, Lababidi S, Bussey KJ, Riss J, Barrett JC, Weinstein JN.

Genome Biol. 2003;4(4):R28. Epub 2003 Mar 25.

PMID: 12702209 [PubMed - indexed for MEDLINE]

9:

A systematic approach to infer biological relevance and biases of gene network structures.

Antonov AV, Tetko IV, Mewes HW.

Nucleic Acids Res. 2006 Jan 10;34(1):e6.

PMID: 16407322 [PubMed - indexed for MEDLINE]

10:

HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data.

Trivedi P, Edwards JW, Wang J, Gadbury GL, Srinivasasainagendra V, Zakharkin SO, Kim K, Mehta T, Brand JP, Patki A, Page GP, Allison DB.

BMC Bioinformatics. 2005 Apr 6;6:86.

PMID: 15813968 [PubMed - indexed for MEDLINE]

11:

Theme discovery from gene lists for identification and viewing of multiple functional groups.

Pehkonen P, Wong G, Törönen P.

BMC Bioinformatics. 2005 Jun 29;6:162.

PMID: 15987504 [PubMed - indexed for MEDLINE]

12:

Mining published lists of cancer related microarray experiments: identification of a gene expression signature having a critical role in cell-cycle control.

Finocchiaro G, Mancuso F, Muller H.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S14.

PMID: 16351740 [PubMed - indexed for MEDLINE]

13:

GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining.

Masseroli M, Martucci D, Pinciroli F.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W293-300.

PMID: 15215397 [PubMed - indexed for MEDLINE]

14:

GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies.

Zhang B, Schmoyer D, Kirov S, Snoddy J.

BMC Bioinformatics. 2004 Feb 18;5:16.

PMID: 14975175 [PubMed - indexed for MEDLINE]

15:

Towards precise classification of cancers based on robust gene functional expression profiles.

Guo Z, Zhang T, Li X, Wang Q, Xu J, Yu H, Zhu J, Wang H, Wang C, Topol EJ, Wang Q, Rao S.

BMC Bioinformatics. 2005 Mar 17;6:58.

PMID: 15774002 [PubMed - indexed for MEDLINE]

16:

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.

Al-Shahrour F, Minguez P, Tárraga J, Medina I, Alloza E, Montaner D, Dopazo J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W91-6. Epub 2007 May 3.

PMID: 17478504 [PubMed - indexed for MEDLINE]

17:

WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data.

Yi M, Horton JD, Cohen JC, Hobbs HH, Stephens RM.

BMC Bioinformatics. 2006 Jan 19;7:30.

PMID: 16423281 [PubMed - indexed for MEDLINE]

18:

Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments.

Liu H, Tarima S, Borders AS, Getchell TV, Getchell ML, Stromberg AJ.

BMC Bioinformatics. 2005 Apr 25;6:106.

PMID: 15850479 [PubMed - indexed for MEDLINE]

19:

An ensemble method for gene discovery based on DNA microarray data.

Li X, Rao S, Zhang T, Guo Z, Zhang Q, Moser KL, Topol EJ.

Sci China C Life Sci. 2004 Oct;47(5):396-405.

PMID: 15623151 [PubMed - indexed for MEDLINE]

20:

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.

Reimand J, Kull M, Peterson H, Hansen J, Vilo J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W193-200. Epub 2007 May 3.

PMID: 17478515 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 154
of 8Next