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Items 1 - 20 of 185
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1:

Extending knowledge of Escherichia coli metabolism by modeling and experiment.

Voit EO, Riley M.

Genome Biol. 2003;4(11):235. Epub 2003 Oct 28. Review.

PMID: 14611652 [PubMed - indexed for MEDLINE]

2:

Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data.

Sun J, Gunzer F, Westendorf AM, Buer J, Scharfe M, Jarek M, Gössling F, Blöcker H, Zeng AP.

J Biotechnol. 2005 May 4;117(2):147-61.

PMID: 15823404 [PubMed - indexed for MEDLINE]

3:

Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms.

König R, Schramm G, Oswald M, Seitz H, Sager S, Zapatka M, Reinelt G, Eils R.

BMC Bioinformatics. 2006 Mar 8;7:119.

PMID: 16524469 [PubMed - indexed for MEDLINE]

4:

Aromatic metabolism versus carbon availability: the regulatory network that controls catabolism of less-preferred carbon sources in Escherichia coli.

Prieto MA, Galán B, Torres B, Ferrández A, Fernández C, Miñambres B, García JL, Díaz E.

FEMS Microbiol Rev. 2004 Oct;28(4):503-18. Review.

PMID: 15374664 [PubMed - indexed for MEDLINE]

5:

A discrete mathematical model applied to genetic regulation and metabolic networks.

Asenjo AJ, Ramirez P, Rapaport I, Aracena J, Goles E, Andrews BA.

J Microbiol Biotechnol. 2007 Mar;17(3):496-510.

PMID: 18050955 [PubMed - indexed for MEDLINE]

6:

Why spherical Escherichia coli dies: the inside story.

Young KD.

J Bacteriol. 2008 Mar;190(5):1497-8. Epub 2007 Dec 28. Review. No abstract available.

PMID: 18165295 [PubMed - indexed for MEDLINE]

7:

New tool for metabolic pathway engineering in Escherichia coli: one-step method to modulate expression of chromosomal genes.

Meynial-Salles I, Cervin MA, Soucaille P.

Appl Environ Microbiol. 2005 Apr;71(4):2140-4.

PMID: 15812048 [PubMed - indexed for MEDLINE]

8:

From the sequence to cell modeling: comprehensive functional genomics in Escherichia coli.

Mori H.

J Biochem Mol Biol. 2004 Jan 31;37(1):83-92. Review.

PMID: 14761306 [PubMed - indexed for MEDLINE]

9:

Transcriptional regulation in constraints-based metabolic models of Escherichia coli.

Covert MW, Palsson BØ.

J Biol Chem. 2002 Aug 2;277(31):28058-64. Epub 2002 May 10.

PMID: 12006566 [PubMed - indexed for MEDLINE]

10:

Reconstructing repressor protein levels from expression of gene targets in Escherichia coli.

Khanin R, Vinciotti V, Wit E.

Proc Natl Acad Sci U S A. 2006 Dec 5;103(49):18592-6. Epub 2006 Nov 22.

PMID: 17121995 [PubMed - indexed for MEDLINE]

11:

Random insertion of a TetR-inducing peptide tag into Escherichia coli proteins allows analysis of protein levels by induction of reporter gene expression.

Schlicht M, Berens C, Daam J, Hillen W.

Appl Environ Microbiol. 2006 Aug;72(8):5637-42.

PMID: 16885321 [PubMed - indexed for MEDLINE]

12:

Genetically constrained metabolic flux analysis.

Cox SJ, Shalel Levanon S, Bennett GN, San KY.

Metab Eng. 2005 Sep-Nov;7(5-6):445-56. Epub 2005 Sep 6.

PMID: 16143552 [PubMed - indexed for MEDLINE]

13:

Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing.

Garcia-Ojalvo J, Elowitz MB, Strogatz SH.

Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):10955-60. Epub 2004 Jul 15.

PMID: 15256602 [PubMed - indexed for MEDLINE]

14:

SbcCD regulation and localization in Escherichia coli.

Darmon E, Lopez-Vernaza MA, Helness AC, Borking A, Wilson E, Thacker Z, Wardrope L, Leach DR.

J Bacteriol. 2007 Sep;189(18):6686-94. Epub 2007 Jul 20.

PMID: 17644583 [PubMed - indexed for MEDLINE]

15:

Hypothesis-driven approach to predict transcriptional units from gene expression data.

Steinhauser D, Junker BH, Luedemann A, Selbig J, Kopka J.

Bioinformatics. 2004 Aug 12;20(12):1928-39. Epub 2004 Mar 25.

PMID: 15044239 [PubMed - indexed for MEDLINE]

16:

Effects of Fis on Escherichia coli gene expression during different growth stages.

Bradley MD, Beach MB, de Koning AP, Pratt TS, Osuna R.

Microbiology. 2007 Sep;153(Pt 9):2922-40.

PMID: 17768236 [PubMed - indexed for MEDLINE]

17:

Time-course data analysis of gene expression profiles reveals purR regulon concerns in organic solvent tolerance in Escherichia coli.

Shimizu K, Hayashi S, Doukyu N, Kobayashi T, Honda H.

J Biosci Bioeng. 2005 Jan;99(1):72-4.

PMID: 16233757 [PubMed - indexed for MEDLINE]

18:

Novel phenotypes of Escherichia coli tat mutants revealed by global gene expression and phenotypic analysis.

Ize B, Porcelli I, Lucchini S, Hinton JC, Berks BC, Palmer T.

J Biol Chem. 2004 Nov 12;279(46):47543-54. Epub 2004 Aug 30.

PMID: 15347649 [PubMed - indexed for MEDLINE]

19:

Generalized hill function method for modeling molecular processes.

Likhoshvai V, Ratushny A.

J Bioinform Comput Biol. 2007 Apr;5(2B):521-31.

PMID: 17636859 [PubMed - indexed for MEDLINE]

20:

Negative regulation of DNA repair gene (ung) expression by the CpxR/CpxA two-component system in Escherichia coli K-12 and induction of mutations by increased expression of CpxR.

Ogasawara H, Teramoto J, Hirao K, Yamamoto K, Ishihama A, Utsumi R.

J Bacteriol. 2004 Dec;186(24):8317-25.

PMID: 15576781 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 185
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