Turn recording back on
Computational prediction of transcription-factor binding site locations.
Bulyk ML.
Genome Biol. 2003;5(1):201. Epub 2003 Dec 23. Review.
PMID: 14709165 [PubMed - indexed for MEDLINE]
Related Articles Free article in PMC
Position specific variation in the rate of evolution in transcription factor binding sites.
Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB.
BMC Evol Biol. 2003 Aug 28;3:19. Epub 2003 Aug 28.
PMID: 12946282 [PubMed - indexed for MEDLINE]
Reliable prediction of transcription factor binding sites by phylogenetic verification.
Li X, Zhong S, Wong WH.
Proc Natl Acad Sci U S A. 2005 Nov 22;102(47):16945-50. Epub 2005 Nov 14.
PMID: 16286651 [PubMed - indexed for MEDLINE]
Combined analysis of expression data and transcription factor binding sites in the yeast genome.
Nagaraj VH, O'Flanagan RA, Bruning AR, Mathias JR, Vershon AK, Sengupta AM.
BMC Genomics. 2004 Aug 26;5(1):59.
PMID: 15331021 [PubMed - indexed for MEDLINE]
Computational discovery of transcriptional regulatory rules.
Pham TH, Clemente JC, Satou K, Ho TB.
Bioinformatics. 2005 Sep 1;21 Suppl 2:ii101-7.
PMID: 16204087 [PubMed - indexed for MEDLINE]
Related Articles
rVista for comparative sequence-based discovery of functional transcription factor binding sites.
Loots GG, Ovcharenko I, Pachter L, Dubchak I, Rubin EM.
Genome Res. 2002 May;12(5):832-9.
PMID: 11997350 [PubMed - indexed for MEDLINE]
Computational approaches to finding and analyzing cis-regulatory elements.
Brown CT.
Methods Cell Biol. 2008;87:337-65. Review.
PMID: 18485306 [PubMed - indexed for MEDLINE]
Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes.
Wagner A.
Bioinformatics. 1999 Oct;15(10):776-84.
PMID: 10705431 [PubMed - indexed for MEDLINE]
Computational identification of combinatorial regulation and transcription factor binding sites.
Ryu T, Kim Y, Kim DW, Lee D.
Biotechnol Bioeng. 2007 Aug 15;97(6):1594-602.
PMID: 17252601 [PubMed - indexed for MEDLINE]
A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli.
Bulyk ML, McGuire AM, Masuda N, Church GM.
Genome Res. 2004 Feb;14(2):201-8.
PMID: 14762058 [PubMed - indexed for MEDLINE]
Integrating genomic data to predict transcription factor binding.
Holloway DT, Kon M, DeLisi C.
Genome Inform. 2005;16(1):83-94.
PMID: 16362910 [PubMed - indexed for MEDLINE]
Computational approaches to identifying transcription factor binding sites in yeast genome.
Li H.
Methods Enzymol. 2002;350:484-95. No abstract available.
PMID: 12073331 [PubMed - indexed for MEDLINE]
Recognition of interferon-inducible sites, promoters, and enhancers.
Ananko EA, Kondrakhin YV, Merkulova TI, Kolchanov NA.
BMC Bioinformatics. 2007 Feb 19;8:56.
PMID: 17309789 [PubMed - indexed for MEDLINE]
[Computational predictions of transcription factor binding sites]
Kawaji H.
Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2877-81. Review. Japanese. No abstract available.
PMID: 15669270 [PubMed - indexed for MEDLINE]
Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques.
Elnitski L, Jin VX, Farnham PJ, Jones SJ.
Genome Res. 2006 Dec;16(12):1455-64. Epub 2006 Oct 19. Review.
PMID: 17053094 [PubMed - indexed for MEDLINE]
Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifs.
Corà D, Di Cunto F, Provero P, Silengo L, Caselle M.
BMC Bioinformatics. 2004 May 11;5:57.
PMID: 15137914 [PubMed - indexed for MEDLINE]
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
Marinescu VD, Kohane IS, Riva A.
BMC Bioinformatics. 2005 Mar 30;6:79.
PMID: 15799782 [PubMed - indexed for MEDLINE]
Toward an atomistic model for predicting transcription-factor binding sites.
Endres RG, Schulthess TC, Wingreen NS.
Proteins. 2004 Nov 1;57(2):262-8.
PMID: 15340913 [PubMed - indexed for MEDLINE]
Predicting transcription factor binding sites using local over-representation and comparative genomics.
Defrance M, Touzet H.
BMC Bioinformatics. 2006 Aug 31;7:396.
PMID: 16945132 [PubMed - indexed for MEDLINE]
Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression.
Murakami K, Kojima T, Sakaki Y.
BMC Genomics. 2004 Feb 23;5(1):16.
PMID: 15053842 [PubMed - indexed for MEDLINE]