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Items 1 - 20 of 375
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1:

Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox.

Brochier C, Forterre P, Gribaldo S.

Genome Biol. 2004;5(3):R17. Epub 2004 Feb 26.

PMID: 15003120 [PubMed - indexed for MEDLINE]

4:

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.

PMID: 11734060 [PubMed - indexed for MEDLINE]

5:

The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens.

Slesarev AI, Mezhevaya KV, Makarova KS, Polushin NN, Shcherbinina OV, Shakhova VV, Belova GI, Aravind L, Natale DA, Rogozin IB, Tatusov RL, Wolf YI, Stetter KO, Malykh AG, Koonin EV, Kozyavkin SA.

Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4644-9.

PMID: 11930014 [PubMed - indexed for MEDLINE]

6:

Archaeal phylogeny based on ribosomal proteins.

Matte-Tailliez O, Brochier C, Forterre P, Philippe H.

Mol Biol Evol. 2002 May;19(5):631-9.

PMID: 11961097 [PubMed - indexed for MEDLINE]

7:

The basal transcription factors TBP and TFB from the mesophilic archaeon Methanosarcina mazeii: structure and conformational changes upon interaction with stress-gene promoters.

Thomsen J, De Biase A, Kaczanowski S, Macario AJ, Thomm M, Zielenkiewicz P, MacColl R, Conway de Macario E.

J Mol Biol. 2001 Jun 8;309(3):589-603.

PMID: 11397082 [PubMed - indexed for MEDLINE]

8:

Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs).

Natale DA, Shankavaram UT, Galperin MY, Wolf YI, Aravind L, Koonin EV.

Genome Biol. 2000;1(5):RESEARCH0009. Epub 2000 Nov 6.

PMID: 11178258 [PubMed - indexed for MEDLINE]

9:

Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?

Brochier C, Gribaldo S, Zivanovic Y, Confalonieri F, Forterre P.

Genome Biol. 2005;6(5):R42. Epub 2005 Apr 14.

PMID: 15892870 [PubMed - indexed for MEDLINE]

10:

Higher-level classification of the Archaea: evolution of methanogenesis and methanogens.

Bapteste E, Brochier C, Boucher Y.

Archaea. 2005 May;1(5):353-63.

PMID: 15876569 [PubMed - indexed for MEDLINE]

12:

Methanopyrus kandleri: an archaeal methanogen unrelated to all other known methanogens.

Burggraf S, Stetter KO, Rouviere P, Woese CR.

Syst Appl Microbiol. 1991;14:346-51.

PMID: 11540073 [PubMed - indexed for MEDLINE]

13:

Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure.

Desmond E, Brochier-Armanet C, Gribaldo S.

BMC Evol Biol. 2007 Jul 2;7:106.

PMID: 17605801 [PubMed - indexed for MEDLINE]

14:

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

Koonin EV, Mushegian AR, Galperin MY, Walker DR.

Mol Microbiol. 1997 Aug;25(4):619-37.

PMID: 9379893 [PubMed - indexed for MEDLINE]

15:

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions.

Martin-Cuadrado AB, Rodriguez-Valera F, Moreira D, Alba JC, Ivars-Martínez E, Henn MR, Talla E, López-García P.

ISME J. 2008 Aug;2(8):865-86. Epub 2008 May 8.

PMID: 18463691 [PubMed - indexed for MEDLINE]

16:

Bacterial origin for the isoprenoid biosynthesis enzyme HMG-CoA reductase of the archaeal orders Thermoplasmatales and Archaeoglobales.

Boucher Y, Huber H, L'Haridon S, Stetter KO, Doolittle WF.

Mol Biol Evol. 2001 Jul;18(7):1378-88.

PMID: 11420376 [PubMed - indexed for MEDLINE]

17:

Archaeal genomics.

Gaasterland T.

Curr Opin Microbiol. 1999 Oct;2(5):542-7. Review.

PMID: 10508726 [PubMed - indexed for MEDLINE]

18:

Recombination between elongation factor 1alpha genes from distantly related archaeal lineages.

Inagaki Y, Susko E, Roger AJ.

Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4528-33. Epub 2006 Mar 14.

PMID: 16537397 [PubMed - indexed for MEDLINE]

19:

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV.

Genome Res. 1999 Jul;9(7):608-28.

PMID: 10413400 [PubMed - indexed for MEDLINE]

20:

Lineage-specific partitions in archaeal transcription.

Coulson RM, Touboul N, Ouzounis CA.

Archaea. 2007 May;2(2):117-25.

PMID: 17350932 [PubMed - indexed for MEDLINE]

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