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Items 1 - 20 of 192
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1:

Exploratory differential gene expression analysis in microarray experiments with no or limited replication.

Loguinov AV, Mian IS, Vulpe CD.

Genome Biol. 2004;5(3):R18. Epub 2004 Mar 1.

PMID: 15003121 [PubMed - indexed for MEDLINE]

2:

Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments.

Townsend JP, Hartl DL.

Genome Biol. 2002;3(12):RESEARCH0071. Epub 2002 Nov 20.

PMID: 12537560 [PubMed - indexed for MEDLINE]

3:

A conditional density error model for the statistical analysis of microarray data.

Love B, Rank DR, Penn SG, Jenkins DA, Thomas RS.

Bioinformatics. 2002 Aug;18(8):1064-72.

PMID: 12176829 [PubMed - indexed for MEDLINE]

4:

Exploratory and confirmatory gene expression profiling of mac1Delta.

De Freitas JM, Kim JH, Poynton H, Su T, Wintz H, Fox T, Holman P, Loguinov A, Keles S, van der Laan M, Vulpe C.

J Biol Chem. 2004 Feb 6;279(6):4450-8. Epub 2003 Oct 8.

PMID: 14534306 [PubMed - indexed for MEDLINE]

5:

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.

Gao F, Foat BC, Bussemaker HJ.

BMC Bioinformatics. 2004 Mar 18;5:31.

PMID: 15113405 [PubMed - indexed for MEDLINE]

6:

Detecting differential gene expression with a semiparametric hierarchical mixture method.

Newton MA, Noueiry A, Sarkar D, Ahlquist P.

Biostatistics. 2004 Apr;5(2):155-76.

PMID: 15054023 [PubMed - indexed for MEDLINE]

7:

A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data.

Zou M, Conzen SD.

Bioinformatics. 2005 Jan 1;21(1):71-9. Epub 2004 Aug 12.

PMID: 15308537 [PubMed - indexed for MEDLINE]

8:

Triple-target microarray experiments: a novel experimental strategy.

Forster T, Costa Y, Roy D, Cooke HJ, Maratou K.

BMC Genomics. 2004 Feb 10;5(1):13.

PMID: 15018645 [PubMed - indexed for MEDLINE]

9:

Systematic approaches for incorporating control spots and data quality information to improve normalization of cDNA microarray data.

Wang D, Zhang CH, Soares MB, Huang J.

J Biopharm Stat. 2007;17(3):415-31.

PMID: 17479391 [PubMed - indexed for MEDLINE]

10:

A Gibbs sampler for the identification of gene expression and network connectivity consistency.

Brynildsen MP, Tran LM, Liao JC.

Bioinformatics. 2006 Dec 15;22(24):3040-6. Epub 2006 Oct 23.

PMID: 17060361 [PubMed - indexed for MEDLINE]

11:

Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays.

Ronald J, Akey JM, Whittle J, Smith EN, Yvert G, Kruglyak L.

Genome Res. 2005 Feb;15(2):284-91.

PMID: 15687292 [PubMed - indexed for MEDLINE]

12:

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.

PMID: 15748298 [PubMed - indexed for MEDLINE]

13:

A bi-dimensional regression tree approach to the modeling of gene expression regulation.

Ruan J, Zhang W.

Bioinformatics. 2006 Feb 1;22(3):332-40. Epub 2005 Nov 22.

PMID: 16303796 [PubMed - indexed for MEDLINE]

14:

Construction of a data dependent analysis (DDA) yeast cDNA microarray experiment for use in toxicogenomics.

Mizukami S, Suzuki Y, Kitagawa E, Momose Y, Kim HJ, Iwahashi H.

Environ Sci. 2004;11(6):325-35.

PMID: 15750578 [PubMed - indexed for MEDLINE]

15:

Global gene expression analysis of yeast cells during sake brewing.

Wu H, Zheng X, Araki Y, Sahara H, Takagi H, Shimoi H.

Appl Environ Microbiol. 2006 Nov;72(11):7353-8. Epub 2006 Sep 22.

PMID: 16997994 [PubMed - indexed for MEDLINE]

16:

Pem: a general statistical approach for identifying differentially expressed genes in time-course cDNA microarray experiment without replicate.

Han X, Sung WK, Feng L.

Comput Syst Bioinformatics Conf. 2006:123-32.

PMID: 17369631 [PubMed - indexed for MEDLINE]

17:

Enriching for direct regulatory targets in perturbed gene-expression profiles.

Tringe SG, Wagner A, Ruby SW.

Genome Biol. 2004;5(4):R29. Epub 2004 Mar 30.

PMID: 15059262 [PubMed - indexed for MEDLINE]

18:

Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network.

Imoto S, Kim S, Goto T, Miyano S, Aburatani S, Tashiro K, Kuhara S.

J Bioinform Comput Biol. 2003 Jul;1(2):231-52.

PMID: 15290771 [PubMed - indexed for MEDLINE]

19:

Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins.

Berger MF, Bulyk ML.

Methods Mol Biol. 2006;338:245-60.

PMID: 16888363 [PubMed - indexed for MEDLINE]

20:

Correlated Discretized Expression score: a method for identifying gene interaction networks from time course microarray expression data.

Larsen P, Almasri E, Chen G, Dai Y.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:5842-5.

PMID: 17946340 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 192
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