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Items 1 - 20 of 98
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1:

Identifying transcriptional targets.

Taverner NV, Smith JC, Wardle FC.

Genome Biol. 2004;5(3):210. Epub 2004 Feb 27. Review.

PMID: 15005803 [PubMed - indexed for MEDLINE]

2:

Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment.

Kim J, Bhinge AA, Morgan XC, Iyer VR.

Nat Methods. 2005 Jan;2(1):47-53. Epub 2004 Dec 21.

PMID: 15782160 [PubMed - indexed for MEDLINE]

3:

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

Mukherjee S, Berger MF, Jona G, Wang XS, Muzzey D, Snyder M, Young RA, Bulyk ML.

Nat Genet. 2004 Dec;36(12):1331-9. Epub 2004 Nov 14.

PMID: 15543148 [PubMed - indexed for MEDLINE]

4:

Combined analysis of expression data and transcription factor binding sites in the yeast genome.

Nagaraj VH, O'Flanagan RA, Bruning AR, Mathias JR, Vershon AK, Sengupta AM.

BMC Genomics. 2004 Aug 26;5(1):59.

PMID: 15331021 [PubMed - indexed for MEDLINE]

5:

Hairy transcriptional repression targets and cofactor recruitment in Drosophila.

Bianchi-Frias D, Orian A, Delrow JJ, Vazquez J, Rosales-Nieves AE, Parkhurst SM.

PLoS Biol. 2004 Jul;2(7):E178. Epub 2004 Jul 13.

PMID: 15252443 [PubMed - indexed for MEDLINE]

6:

Transcriptional regulation and binding of heat shock factor 1 and heat shock factor 2 to 32 human heat shock genes during thermal stress and differentiation.

Trinklein ND, Chen WC, Kingston RE, Myers RM.

Cell Stress Chaperones. 2004 Mar;9(1):21-8.

PMID: 15270074 [PubMed - indexed for MEDLINE]

7:

Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays.

Rada-Iglesias A, Wallerman O, Koch C, Ameur A, Enroth S, Clelland G, Wester K, Wilcox S, Dovey OM, Ellis PD, Wraight VL, James K, Andrews R, Langford C, Dhami P, Carter N, Vetrie D, Pontén F, Komorowski J, Dunham I, Wadelius C.

Hum Mol Genet. 2005 Nov 15;14(22):3435-47. Epub 2005 Oct 12.

PMID: 16221759 [PubMed - indexed for MEDLINE]

8:

BEARR: Batch Extraction and Analysis of cis-Regulatory Regions.

Vega VB, Bangarusamy DK, Miller LD, Liu ET, Lin CY.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W257-60.

PMID: 15215391 [PubMed - indexed for MEDLINE]

9:

Integration of genome and chromatin structure with gene expression profiles to predict c-MYC recognition site binding and function.

Chen Y, Blackwell TW, Chen J, Gao J, Lee AW, States DJ.

PLoS Comput Biol. 2007 Apr 6;3(4):e63.

PMID: 17411336 [PubMed - indexed for MEDLINE]

10:

Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions.

Impey S, McCorkle SR, Cha-Molstad H, Dwyer JM, Yochum GS, Boss JM, McWeeney S, Dunn JJ, Mandel G, Goodman RH.

Cell. 2004 Dec 29;119(7):1041-54.

PMID: 15620361 [PubMed - indexed for MEDLINE]

11:

X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila.

Legube G, McWeeney SK, Lercher MJ, Akhtar A.

Genes Dev. 2006 Apr 1;20(7):871-83. Epub 2006 Mar 17.

PMID: 16547175 [PubMed - indexed for MEDLINE]

12:

Identification of transcriptional regulators using binding site enrichment analysis.

Kim TM, Jung MH.

In Silico Biol. 2006;6(6):531-44.

PMID: 17518763 [PubMed - indexed for MEDLINE]

14:

Protein binding microarrays for the characterization of DNA-protein interactions.

Bulyk ML.

Adv Biochem Eng Biotechnol. 2007;104:65-85. Review.

PMID: 17290819 [PubMed - indexed for MEDLINE]

15:

Isolation and characterization of the human Cdc2L1 gene promoter.

Kahle A, Feng Y, A Nelson M.

Gene. 2005 Jan 3;344:53-60. Epub 2004 Dec 10.

PMID: 15656972 [PubMed - indexed for MEDLINE]

16:

DNA microarray technologies for measuring protein-DNA interactions.

Bulyk ML.

Curr Opin Biotechnol. 2006 Aug;17(4):422-30. Epub 2006 Jul 12. Review.

PMID: 16839757 [PubMed - indexed for MEDLINE]

17:

Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation.

Qian J, Esumi N, Chen Y, Wang Q, Chowers I, Zack DJ.

Nucleic Acids Res. 2005 Jun 20;33(11):3479-91. Print 2005.

PMID: 15967807 [PubMed - indexed for MEDLINE]

18:

Genome-wide mapping of in vivo protein-DNA interactions.

Johnson DS, Mortazavi A, Myers RM, Wold B.

Science. 2007 Jun 8;316(5830):1497-502. Epub 2007 May 31.

PMID: 17540862 [PubMed - indexed for MEDLINE]

20:

Transcriptional targets of the chromatin-remodelling factor SMARCA4/BRG1 in lung cancer cells.

Medina PP, Carretero J, Ballestar E, Angulo B, Lopez-Rios F, Esteller M, Sanchez-Cespedes M.

Hum Mol Genet. 2005 Apr 1;14(7):973-82. Epub 2005 Feb 24.

PMID: 15731117 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 98
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