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Items 1 - 20 of 207
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1:

Enriching for direct regulatory targets in perturbed gene-expression profiles.

Tringe SG, Wagner A, Ruby SW.

Genome Biol. 2004;5(4):R29. Epub 2004 Mar 30.

PMID: 15059262 [PubMed - indexed for MEDLINE]

2:

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.

Gao F, Foat BC, Bussemaker HJ.

BMC Bioinformatics. 2004 Mar 18;5:31.

PMID: 15113405 [PubMed - indexed for MEDLINE]

3:

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.

PMID: 15748298 [PubMed - indexed for MEDLINE]

4:

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

Nat Biotechnol. 2003 Nov;21(11):1337-42. Epub 2003 Oct 12.

PMID: 14555958 [PubMed - indexed for MEDLINE]

5:

Sample scale-free gene regulatory network using gene ontology.

Chen G, Larsen P, Almasri E, Dai Y.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:5523-6.

PMID: 17946312 [PubMed - indexed for MEDLINE]

6:

A fuzzy logic approach to analyzing gene expression data.

Woolf PJ, Wang Y.

Physiol Genomics. 2000 Jun 29;3(1):9-15.

PMID: 11015595 [PubMed - indexed for MEDLINE]

7:

Combined analysis of expression data and transcription factor binding sites in the yeast genome.

Nagaraj VH, O'Flanagan RA, Bruning AR, Mathias JR, Vershon AK, Sengupta AM.

BMC Genomics. 2004 Aug 26;5(1):59.

PMID: 15331021 [PubMed - indexed for MEDLINE]

8:

Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein.

Raghava GP, Han JH.

BMC Bioinformatics. 2005 Mar 17;6:59.

PMID: 15773999 [PubMed - indexed for MEDLINE]

9:

Modelling gene functional linkages using yeast microarray data.

Wang T, Xue G, Touchman JW.

Int J Bioinform Res Appl. 2007;3(2):170-86.

PMID: 18048187 [PubMed - indexed for MEDLINE]

10:

Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data.

Wu WS, Li WH, Chen BS.

BMC Bioinformatics. 2007 Jun 8;8:188.

PMID: 17559637 [PubMed - indexed for MEDLINE]

11:

Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks.

Kim CS.

BMC Bioinformatics. 2007 Jul 13;8:251.

PMID: 17626641 [PubMed - indexed for MEDLINE]

12:

A hybrid Bayesian network learning method for constructing gene networks.

Wang M, Chen Z, Cloutier S.

Comput Biol Chem. 2007 Oct;31(5-6):361-72. Epub 2007 Aug 19.

PMID: 17889617 [PubMed - indexed for MEDLINE]

13:

From co-expression to co-regulation: how many microarray experiments do we need?

Yeung KY, Medvedovic M, Bumgarner RE.

Genome Biol. 2004;5(7):R48. Epub 2004 Jun 28.

PMID: 15239833 [PubMed - indexed for MEDLINE]

14:

Using directed information to build biologically relevant influence networks.

Rao A, Hero AO 3rd, States DJ, Engel JD.

Comput Syst Bioinformatics Conf. 2007;6:145-56.

PMID: 17951820 [PubMed - indexed for MEDLINE]

15:

Learning regulatory programs that accurately predict differential expression with MEDUSA.

Kundaje A, Lianoglou S, Li X, Quigley D, Arias M, Wiggins CH, Zhang L, Leslie C.

Ann N Y Acad Sci. 2007 Dec;1115:178-202. Epub 2007 Oct 12.

PMID: 17934055 [PubMed - indexed for MEDLINE]

16:

ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context.

Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A.

BMC Bioinformatics. 2006 Mar 20;7 Suppl 1:S7.

PMID: 16723010 [PubMed - indexed for MEDLINE]

17:

Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data.

Qian J, Lin J, Luscombe NM, Yu H, Gerstein M.

Bioinformatics. 2003 Oct 12;19(15):1917-26.

PMID: 14555624 [PubMed - indexed for MEDLINE]

18:

Transcriptional networks: reverse-engineering gene regulation on a global scale.

Chua G, Robinson MD, Morris Q, Hughes TR.

Curr Opin Microbiol. 2004 Dec;7(6):638-46. Review.

PMID: 15556037 [PubMed - indexed for MEDLINE]

19:

Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments.

Liu H, Tarima S, Borders AS, Getchell TV, Getchell ML, Stromberg AJ.

BMC Bioinformatics. 2005 Apr 25;6:106.

PMID: 15850479 [PubMed - indexed for MEDLINE]

20:

Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification.

Haverty PM, Hansen U, Weng Z.

Nucleic Acids Res. 2004 Jan 2;32(1):179-88. Print 2004.

PMID: 14704355 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 207
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