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Items 1 - 20 of 128
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1:

Orthologous gene-expression profiling in multi-species models: search for candidate genes.

Grigoryev DN, Ma SF, Irizarry RA, Ye SQ, Quackenbush J, Garcia JG.

Genome Biol. 2004;5(5):R34. Epub 2004 Apr 27.

PMID: 15128448 [PubMed - indexed for MEDLINE]

2:

Combining Affymetrix microarray results.

Stevens JR, Doerge RW.

BMC Bioinformatics. 2005 Mar 17;6:57.

PMID: 15774008 [PubMed - indexed for MEDLINE]

3:

Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.

Fang H, Tong W, Perkins R, Shi L, Hong H, Cao X, Xie Q, Yim SH, Ward JM, Pitot HC, Dragan YP.

BMC Bioinformatics. 2005 Jul 15;6 Suppl 2:S6.

PMID: 16026603 [PubMed - indexed for MEDLINE]

4:

Bioinformatic identification of novel early stress response genes in rodent models of lung injury.

Ma SF, Grigoryev DN, Taylor AD, Nonas S, Sammani S, Ye SQ, Garcia JG.

Am J Physiol Lung Cell Mol Physiol. 2005 Sep;289(3):L468-77. Epub 2005 May 20.

PMID: 15908477 [PubMed - indexed for MEDLINE]

5:

Models for microarray gene expression data.

Lee ML, Lu W, Whitmore GA, Beier D.

J Biopharm Stat. 2002 Feb;12(1):1-19.

PMID: 12146717 [PubMed - indexed for MEDLINE]

6:

Optimizing microarray in experimental hypertension.

Shannon MF, McKenzie KU, Edgley A, Rao S, Peng K, Shweta A, Schyvens CG, Anderson WP, Wilson SR, Pittelkow YE, Ohms S, Whitworth JA.

Kidney Int. 2005 Jan;67(1):364-70.

PMID: 15610263 [PubMed - indexed for MEDLINE]

7:

Gene expression profile changes are commonly modulated across models and species after traumatic brain injury.

Natale JE, Ahmed F, Cernak I, Stoica B, Faden AI.

J Neurotrauma. 2003 Oct;20(10):907-27.

PMID: 14588109 [PubMed - indexed for MEDLINE]

8:

Bayesian hierarchical modeling for time course microarray experiments.

Chi YY, Ibrahim JG, Bissahoyo A, Threadgill DW.

Biometrics. 2007 Jun;63(2):496-504.

PMID: 17688501 [PubMed - indexed for MEDLINE]

9:

Observation of intermittency in gene expression on cDNA microarrays.

Peterson LE, Lau K.

Genome Biol. 2002 May 29;3(7):PREPRINT0005. Epub 2002 May 29.

PMID: 12184800 [PubMed - indexed for MEDLINE]

10:

Cross-species hybridizations on a multi-species cDNA microarray to identify evolutionarily conserved genes expressed in oocytes.

Vallée M, Robert C, Méthot S, Palin MF, Sirard MA.

BMC Genomics. 2006 May 10;7:113.

PMID: 16686947 [PubMed - indexed for MEDLINE]

11:

maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments.

Conesa A, Nueda MJ, Ferrer A, Talón M.

Bioinformatics. 2006 May 1;22(9):1096-102. Epub 2006 Feb 15.

PMID: 16481333 [PubMed - indexed for MEDLINE]

12:

Key aspects of analyzing microarray gene-expression data.

Chen JJ.

Pharmacogenomics. 2007 May;8(5):473-82. Review.

PMID: 17465711 [PubMed - indexed for MEDLINE]

13:

Molecular profiling of a rat model of colitis: validation of known inflammatory genes and identification of novel disease-associated targets.

Rivera E, Flores I, Rivera E, Appleyard CB.

Inflamm Bowel Dis. 2006 Oct;12(10):950-66.

PMID: 17012966 [PubMed - indexed for MEDLINE]

14:

Transcript profiling of functionally related groups of genes during conditional differentiation of a mammalian cochlear hair cell line.

Rivolta MN, Halsall A, Johnson CM, Tones MA, Holley MC.

Genome Res. 2002 Jul;12(7):1091-9.

PMID: 12097346 [PubMed - indexed for MEDLINE]

15:

CLOE: identification of putative functional relationships among genes by comparison of expression profiles between two species.

Pellegrino M, Provero P, Silengo L, Di Cunto F.

BMC Bioinformatics. 2004 Nov 19;5:179.

PMID: 15550177 [PubMed - indexed for MEDLINE]

16:

Cross platform microarray analysis for robust identification of differentially expressed genes.

Bosotti R, Locatelli G, Healy S, Scacheri E, Sartori L, Mercurio C, Calogero R, Isacchi A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S5.

PMID: 17430572 [PubMed - indexed for MEDLINE]

17:

Hu/Mu ProtIn oligonucleotide microarray: dual-species array for profiling protease and protease inhibitor gene expression in tumors and their microenvironment.

Schwartz DR, Moin K, Yao B, Matrisian LM, Coussens LM, Bugge TH, Fingleton B, Acuff HB, Sinnamon M, Nassar H, Platts AE, Krawetz SA, Linebaugh BE, Sloane BF.

Mol Cancer Res. 2007 May;5(5):443-54.

PMID: 17510311 [PubMed - indexed for MEDLINE]

18:

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.

Sartor MA, Tomlinson CR, Wesselkamper SC, Sivaganesan S, Leikauf GD, Medvedovic M.

BMC Bioinformatics. 2006 Dec 19;7:538.

PMID: 17177995 [PubMed - indexed for MEDLINE]

19:

Compensating for unknown confounders in microarray data analysis using filtered permutations.

Scheid S, Spang R.

J Comput Biol. 2007 Jun;14(5):669-81.

PMID: 17683267 [PubMed - indexed for MEDLINE]

20:

An evolutionary approach for gene expression patterns.

Tsai HK, Yang JM, Tsai YF, Kao CY.

IEEE Trans Inf Technol Biomed. 2004 Jun;8(2):69-78.

PMID: 15217251 [PubMed - indexed for MEDLINE]

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