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Items 1 - 20 of 109
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1:

Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data.

Baerends RJ, Smits WK, de Jong A, Hamoen LW, Kok J, Kuipers OP.

Genome Biol. 2004;5(5):R37. Epub 2004 Apr 5.

PMID: 15128451 [PubMed - indexed for MEDLINE]

2:

Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363.

Zomer AL, Buist G, Larsen R, Kok J, Kuipers OP.

J Bacteriol. 2007 Feb;189(4):1366-81. Epub 2006 Oct 6.

PMID: 17028270 [PubMed - indexed for MEDLINE]

3:

The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element.

den Hengst CD, van Hijum SA, Geurts JM, Nauta A, Kok J, Kuipers OP.

J Biol Chem. 2005 Oct 7;280(40):34332-42. Epub 2005 Jul 21.

PMID: 16040604 [PubMed - indexed for MEDLINE]

4:

Transcriptome analysis of the Rhodobacter sphaeroides PpsR regulon: PpsR as a master regulator of photosystem development.

Moskvin OV, Gomelsky L, Gomelsky M.

J Bacteriol. 2005 Mar;187(6):2148-56.

PMID: 15743963 [PubMed - indexed for MEDLINE]

5:

In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon.

Erill I, Escribano M, Campoy S, Barbé J.

Bioinformatics. 2003 Nov 22;19(17):2225-36.

PMID: 14630651 [PubMed - indexed for MEDLINE]

6:

VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles.

La Rosa P, Viara E, Hupé P, Pierron G, Liva S, Neuvial P, Brito I, Lair S, Servant N, Robine N, Manié E, Brennetot C, Janoueix-Lerosey I, Raynal V, Gruel N, Rouveirol C, Stransky N, Stern MH, Delattre O, Aurias A, Radvanyi F, Barillot E.

Bioinformatics. 2006 Sep 1;22(17):2066-73. Epub 2006 Jul 4.

PMID: 16820431 [PubMed - indexed for MEDLINE]

7:

Genetic structure and transcriptional analysis of the arginine deiminase (ADI) cluster in Lactococcus lactis MG1363.

Budin-Verneuil A, Maguin E, Auffray Y, Ehrlich DS, Pichereau V.

Can J Microbiol. 2006 Jul;52(7):617-22.

PMID: 16917516 [PubMed - indexed for MEDLINE]

8:

Defining the Mga regulon: Comparative transcriptome analysis reveals both direct and indirect regulation by Mga in the group A streptococcus.

Ribardo DA, McIver KS.

Mol Microbiol. 2006 Oct;62(2):491-508. Epub 2006 Sep 8.

PMID: 16965517 [PubMed - indexed for MEDLINE]

9:

CAGER: classification analysis of gene expression regulation using multiple information sources.

Ruan J, Zhang W.

BMC Bioinformatics. 2005 May 12;6:114.

PMID: 15890068 [PubMed - indexed for MEDLINE]

10:

Evolution of the NadR regulon in Enterobacteriaceae.

Gerasimova AV, Gelfand MS.

J Bioinform Comput Biol. 2005 Aug;3(4):1007-19.

PMID: 16078372 [PubMed - indexed for MEDLINE]

11:

Transcriptome analysis and related databases of Lactococcus lactis.

Kuipers OP, de Jong A, Baerends RJ, van Hijum SA, Zomer AL, Karsens HA, den Hengst CD, Kramer NE, Buist G, Kok J.

Antonie Van Leeuwenhoek. 2002 Aug;82(1-4):113-22. Review.

PMID: 12369183 [PubMed - indexed for MEDLINE]

12:

PREDetector: a new tool to identify regulatory elements in bacterial genomes.

Hiard S, Marée R, Colson S, Hoskisson PA, Titgemeyer F, van Wezel GP, Joris B, Wehenkel L, Rigali S.

Biochem Biophys Res Commun. 2007 Jun 15;357(4):861-4. Epub 2007 Apr 12.

PMID: 17451648 [PubMed - indexed for MEDLINE]

13:

Regulation of sugar catabolism in Lactococcus lactis.

Kowalczyk M, Bardowski J.

Crit Rev Microbiol. 2007;33(1):1-13. Review.

PMID: 17453928 [PubMed - indexed for MEDLINE]

14:

Genome-wide analysis of transcriptional hierarchy and feedback regulation in the flagellar system of Helicobacter pylori.

Niehus E, Gressmann H, Ye F, Schlapbach R, Dehio M, Dehio C, Stack A, Meyer TF, Suerbaum S, Josenhans C.

Mol Microbiol. 2004 May;52(4):947-61.

PMID: 15130117 [PubMed - indexed for MEDLINE]

15:

Fructose utilization in Lactococcus lactis as a model for low-GC gram-positive bacteria: its regulator, signal, and DNA-binding site.

Barrière C, Veiga-da-Cunha M, Pons N, Guédon E, van Hijum SA, Kok J, Kuipers OP, Ehrlich DS, Renault P.

J Bacteriol. 2005 Jun;187(11):3752-61.

PMID: 15901699 [PubMed - indexed for MEDLINE]

17:

Transcriptome analysis of temporal regulation of carbon metabolism by CcpA in Bacillus subtilis reveals additional target genes.

Lulko AT, Buist G, Kok J, Kuipers OP.

J Mol Microbiol Biotechnol. 2007;12(1-2):82-95.

PMID: 17183215 [PubMed - indexed for MEDLINE]

18:

Software for quantitation and visualization of expression array data.

Strehlow D.

Biotechniques. 2000 Jul;29(1):118-21.

PMID: 10907086 [PubMed - indexed for MEDLINE]

20:

Identification and functional characterization of the Lactococcus lactis CodY-regulated branched-chain amino acid permease BcaP (CtrA).

den Hengst CD, Groeneveld M, Kuipers OP, Kok J.

J Bacteriol. 2006 May;188(9):3280-9.

PMID: 16621821 [PubMed - indexed for MEDLINE]

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