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Items 1 - 20 of 354
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1:

From co-expression to co-regulation: how many microarray experiments do we need?

Yeung KY, Medvedovic M, Bumgarner RE.

Genome Biol. 2004;5(7):R48. Epub 2004 Jun 28.

PMID: 15239833 [PubMed - indexed for MEDLINE]

2:

Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering.

de Brevern AG, Hazout S, Malpertuy A.

BMC Bioinformatics. 2004 Aug 23;5:114.

PMID: 15324460 [PubMed - indexed for MEDLINE]

3:

Microarray data mining using landmark gene-guided clustering.

Chopra P, Kang J, Yang J, Cho H, Kim HS, Lee MG.

BMC Bioinformatics. 2008 Feb 11;9:92.

PMID: 18267003 [PubMed - indexed for MEDLINE]

4:

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.

Datta S, Datta S.

BMC Bioinformatics. 2006 Aug 31;7:397.

PMID: 16945146 [PubMed - indexed for MEDLINE]

5:

Judging the quality of gene expression-based clustering methods using gene annotation.

Gibbons FD, Roth FP.

Genome Res. 2002 Oct;12(10):1574-81.

PMID: 12368250 [PubMed - indexed for MEDLINE]

6:

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.

Gao F, Foat BC, Bussemaker HJ.

BMC Bioinformatics. 2004 Mar 18;5:31.

PMID: 15113405 [PubMed - indexed for MEDLINE]

7:

Effect of data normalization on fuzzy clustering of DNA microarray data.

Kim SY, Lee JW, Bae JS.

BMC Bioinformatics. 2006 Mar 14;7:134.

PMID: 16533412 [PubMed - indexed for MEDLINE]

8:

Defining transcription modules using large-scale gene expression data.

Ihmels J, Bergmann S, Barkai N.

Bioinformatics. 2004 Sep 1;20(13):1993-2003. Epub 2004 Mar 25.

PMID: 15044247 [PubMed - indexed for MEDLINE]

9:

Integrating genomic data to predict transcription factor binding.

Holloway DT, Kon M, DeLisi C.

Genome Inform. 2005;16(1):83-94.

PMID: 16362910 [PubMed - indexed for MEDLINE]

10:

Integration of known transcription factor binding site information and gene expression data to advance from co-expression to co-regulation.

Clements M, van Someren EP, Knijnenburg TA, Reinders MJ.

Genomics Proteomics Bioinformatics. 2007 May;5(2):86-101.

PMID: 17893074 [PubMed - indexed for MEDLINE]

11:

Clustering and re-clustering for pattern discovery in gene expression data.

Ma PC, Chan KC, Chiu DK.

J Bioinform Comput Biol. 2005 Apr;3(2):281-301.

PMID: 15852506 [PubMed - indexed for MEDLINE]

13:

Using local gene expression similarities to discover regulatory binding site modules.

WilczyƄski B, Hvidsten TR, Kryshtafovych A, Tiuryn J, Komorowski J, Fidelis K.

BMC Bioinformatics. 2006 Nov 17;7:505.

PMID: 17109764 [PubMed - indexed for MEDLINE]

14:

Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data.

Huang D, Pan W.

Bioinformatics. 2006 May 15;22(10):1259-68. Epub 2006 Feb 24.

PMID: 16500932 [PubMed - indexed for MEDLINE]

15:

Comparisons of graph-structure clustering methods for gene expression data.

Fang Z, Liu L, Yang J, Luo QM, Li YX.

Acta Biochim Biophys Sin (Shanghai). 2006 Jun;38(6):379-84.

PMID: 16761095 [PubMed - indexed for MEDLINE]

16:

Combined analysis of expression data and transcription factor binding sites in the yeast genome.

Nagaraj VH, O'Flanagan RA, Bruning AR, Mathias JR, Vershon AK, Sengupta AM.

BMC Genomics. 2004 Aug 26;5(1):59.

PMID: 15331021 [PubMed - indexed for MEDLINE]

17:

An approach for clustering gene expression data with error information.

Tjaden B.

BMC Bioinformatics. 2006 Jan 12;7:17.

PMID: 16409635 [PubMed - indexed for MEDLINE]

18:

Knowledge-assisted recognition of cluster boundaries in gene expression data.

Okada Y, Sahara T, Mitsubayashi H, Ohgiya S, Nagashima T.

Artif Intell Med. 2005 Sep-Oct;35(1-2):171-83.

PMID: 16054350 [PubMed - indexed for MEDLINE]

19:

Bayesian infinite mixture model based clustering of gene expression profiles.

Medvedovic M, Sivaganesan S.

Bioinformatics. 2002 Sep;18(9):1194-206.

PMID: 12217911 [PubMed - indexed for MEDLINE]

20:

Cluster stability scores for microarray data in cancer studies.

Smolkin M, Ghosh D.

BMC Bioinformatics. 2003 Sep 6;4:36. Epub 2003 Sep 6.

PMID: 12959646 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 354
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