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Items 1 - 20 of 403
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1:

Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1.

Bonneau R, Baliga NS, Deutsch EW, Shannon P, Hood L.

Genome Biol. 2004;5(8):R52. Epub 2004 Jul 12.

PMID: 15287974 [PubMed - indexed for MEDLINE]

2:

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo.

Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, Baliga NS, Thorsson V.

Genome Biol. 2006;7(5):R36. Epub 2006 May 10.

PMID: 16686963 [PubMed - indexed for MEDLINE]

3:

Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea.

Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV.

Genome Res. 2004 Nov;14(11):2221-34. Erratum in: Genome Res. 2004 Dec;14(12):2510.

PMID: 15520287 [PubMed - indexed for MEDLINE]

4:

Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1.

Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J.

Genome Res. 2004 Jun;14(6):1025-35. Epub 2004 May 12.

PMID: 15140832 [PubMed - indexed for MEDLINE]

5:

Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter.

Gan RR, Yi EC, Chiu Y, Lee H, Kao YC, Wu TH, Aebersold R, Goodlett DR, Ng WV.

Mol Cell Proteomics. 2006 Jun;5(6):987-97. Epub 2006 Feb 23.

PMID: 16497792 [PubMed - indexed for MEDLINE]

6:

Low-pass sequencing for microbial comparative genomics.

Goo YA, Roach J, Glusman G, Baliga NS, Deutsch K, Pan M, Kennedy S, DasSarma S, Ng WV, Hood L.

BMC Genomics. 2004 Jan 12;5(1):3.

PMID: 14718067 [PubMed - indexed for MEDLINE]

7:

Essential and non-essential DNA replication genes in the model halophilic Archaeon, Halobacterium sp. NRC-1.

Berquist BR, DasSarma P, DasSarma S.

BMC Genet. 2007 Jun 8;8:31.

PMID: 17559652 [PubMed - indexed for MEDLINE]

8:

Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.

Anantharaman V, Koonin EV, Aravind L.

J Mol Biol. 2001 Apr 13;307(5):1271-92.

PMID: 11292341 [PubMed - indexed for MEDLINE]

9:

Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1.

Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L, Ng WV.

Mol Cell Proteomics. 2003 Aug;2(8):506-24. Epub 2003 Jul 18.

PMID: 12872007 [PubMed - indexed for MEDLINE]

11:

Proteomics of Halophilic archaea.

Joo WA, Kim CW.

J Chromatogr B Analyt Technol Biomed Life Sci. 2005 Feb 5;815(1-2):237-50.

PMID: 15652813 [PubMed - indexed for MEDLINE]

12:

Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach.

Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L.

Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):14913-8. Epub 2002 Oct 28.

PMID: 12403819 [PubMed - indexed for MEDLINE]

14:

Poorly conserved ORFs in the genome of the archaea Halobacterium sp. NRC-1 correspond to expressed proteins.

Shmuely H, Dinitz E, Dahan I, Eichler J, Fischer D, Shaanan B.

Bioinformatics. 2004 May 22;20(8):1248-53. Epub 2004 Feb 10.

PMID: 14871864 [PubMed - indexed for MEDLINE]

15:

The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.

Woodson JD, Peck RF, Krebs MP, Escalante-Semerena JC.

J Bacteriol. 2003 Jan;185(1):311-6.

PMID: 12486068 [PubMed - indexed for MEDLINE]

16:

An archaeal protein with homology to the eukaryotic translation initiation factor 5A shows ribonucleolytic activity.

Wagner S, Klug G.

J Biol Chem. 2007 May 11;282(19):13966-76. Epub 2007 Mar 16.

PMID: 17369252 [PubMed - indexed for MEDLINE]

17:

Prediction of protein function from protein sequence and structure.

Whisstock JC, Lesk AM.

Q Rev Biophys. 2003 Aug;36(3):307-40. Review.

PMID: 15029827 [PubMed - indexed for MEDLINE]

18:

Structure-based functional inference in structural genomics.

Kim SH, Shin DH, Choi IG, Schulze-Gahmen U, Chen S, Kim R.

J Struct Funct Genomics. 2003;4(2-3):129-35. Review.

PMID: 14649297 [PubMed - indexed for MEDLINE]

19:

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.

Milanesi L, Petrillo M, Sepe L, Boccia A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S20.

PMID: 16351747 [PubMed - indexed for MEDLINE]

20:

Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs).

Natale DA, Shankavaram UT, Galperin MY, Wolf YI, Aravind L, Koonin EV.

Genome Biol. 2000;1(5):RESEARCH0009. Epub 2000 Nov 6.

PMID: 11178258 [PubMed - indexed for MEDLINE]

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