1:
System-based proteomic analysis of the interferon response in human liver cells.
Yan W, Lee H, Yi EC, Reiss D, Shannon P, Kwieciszewski BK, Coito C, Li XJ, Keller A, Eng J, Galitski T, Goodlett DR, Aebersold R, Katze MG.
Genome Biol. 2004;5(8):R54. Epub 2004 Jul 22.
PMID: 15287976 [PubMed - indexed for MEDLINE]
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5:
The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation.
von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD.
Mol Cell Proteomics. 2003 Jul;2(7):428-42. Epub 2003 Jun 25.
PMID: 12832459 [PubMed - indexed for MEDLINE]
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The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts.
von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD.
Mol Cell Proteomics. 2003 Jul;2(7):426-7. Epub 2003 Jun 25.
PMID: 12832456 [PubMed - indexed for MEDLINE]
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Expressional screening of interferon-stimulated genes for antiviral activity against hepatitis C virus replication.
Itsui Y, Sakamoto N, Kurosaki M, Kanazawa N, Tanabe Y, Koyama T, Takeda Y, Nakagawa M, Kakinuma S, Sekine Y, Maekawa S, Enomoto N, Watanabe M.
J Viral Hepat. 2006 Oct;13(10):690-700.
PMID: 16970601 [PubMed - indexed for MEDLINE]
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Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.
Bouyssié D, Gonzalez de Peredo A, Mouton E, Albigot R, Roussel L, Ortega N, Cayrol C, Burlet-Schiltz O, Girard JP, Monsarrat B.
Mol Cell Proteomics. 2007 Sep;6(9):1621-37. Epub 2007 May 28.
PMID: 17533220 [PubMed - indexed for MEDLINE]
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Host cell responses induced by hepatitis C virus binding.
Fang X, Zeisel MB, Wilpert J, Gissler B, Thimme R, Kreutz C, Maiwald T, Timmer J, Kern WV, Donauer J, Geyer M, Walz G, Depla E, von Weizsäcker F, Blum HE, Baumert TF.
Hepatology. 2006 Jun;43(6):1326-36.
PMID: 16729312 [PubMed - indexed for MEDLINE]
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