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Items 1 - 20 of 113
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1:

Modular decomposition of protein-protein interaction networks.

Gagneur J, Krause R, Bouwmeester T, Casari G.

Genome Biol. 2004;5(8):R57. Epub 2004 Jul 21.

PMID: 15287979 [PubMed - indexed for MEDLINE]

2:

Identification of functional modules in a PPI network by clique percolation clustering.

Zhang S, Ning X, Zhang XS.

Comput Biol Chem. 2006 Dec;30(6):445-51. Epub 2006 Nov 13.

PMID: 17098476 [PubMed - indexed for MEDLINE]

3:

TNFalpha- and IKKbeta-mediated TANK/I-TRAF phosphorylation: implications for interaction with NEMO/IKKgamma and NF-kappaB activation.

Bonif M, Meuwis MA, Close P, Benoit V, Heyninck K, Chapelle JP, Bours V, Merville MP, Piette J, Beyaert R, Chariot A.

Biochem J. 2006 Mar 15;394(Pt 3):593-603.

PMID: 16336209 [PubMed - indexed for MEDLINE]

5:

Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map.

Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, Andrews B, Boone C, Berger SL, Hieter P, Zhang Z, Brown GW, Ingles CJ, Emili A, Allis CD, Toczyski DP, Weissman JS, Greenblatt JF, Krogan NJ.

Nature. 2007 Apr 12;446(7137):806-10. Epub 2007 Feb 21.

PMID: 17314980 [PubMed - indexed for MEDLINE]

6:

Transcriptional networks: reverse-engineering gene regulation on a global scale.

Chua G, Robinson MD, Morris Q, Hughes TR.

Curr Opin Microbiol. 2004 Dec;7(6):638-46. Review.

PMID: 15556037 [PubMed - indexed for MEDLINE]

7:

Interaction between Rtg2p and Mks1p in the regulation of the RTG pathway of Saccharomyces cerevisiae.

Ferreira Júnior JR, Spírek M, Liu Z, Butow RA.

Gene. 2005 Jul 18;354:2-8.

PMID: 15967597 [PubMed - indexed for MEDLINE]

8:

Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks.

Nariai N, Kim S, Imoto S, Miyano S.

Pac Symp Biocomput. 2004:336-47.

PMID: 14992515 [PubMed - indexed for MEDLINE]

9:

Modularity of the transcriptional response of protein complexes in yeast.

Simonis N, Gonze D, Orsi C, van Helden J, Wodak SJ.

J Mol Biol. 2006 Oct 20;363(2):589-610. Epub 2006 Jul 3.

PMID: 16973176 [PubMed - indexed for MEDLINE]

10:

Assembly of the Hap2p/Hap3p/Hap4p/Hap5p-DNA complex in Saccharomyces cerevisiae.

McNabb DS, Pinto I.

Eukaryot Cell. 2005 Nov;4(11):1829-39.

PMID: 16278450 [PubMed - indexed for MEDLINE]

11:

A human-specific TNF-responsive promoter for Goodpasture antigen-binding protein.

Granero F, Revert F, Revert-Ros F, Lainez S, Martínez-Martínez P, Saus J.

FEBS J. 2005 Oct;272(20):5291-305.

PMID: 16218959 [PubMed - indexed for MEDLINE]

13:

Protein complex compositions predicted by structural similarity.

Davis FP, Braberg H, Shen MY, Pieper U, Sali A, Madhusudhan MS.

Nucleic Acids Res. 2006 May 31;34(10):2943-52. Print 2006.

PMID: 16738133 [PubMed - indexed for MEDLINE]

14:

A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.

Hart GT, Lee I, Marcotte ER.

BMC Bioinformatics. 2007 Jul 2;8:236.

PMID: 17605818 [PubMed - indexed for MEDLINE]

15:

Specificity and stability in topology of protein networks.

Maslov S, Sneppen K.

Science. 2002 May 3;296(5569):910-3.

PMID: 11988575 [PubMed - indexed for MEDLINE]

16:

Gene duplication and hierarchical modularity in intracellular interaction networks.

Hallinan J.

Biosystems. 2004 Apr-Jun;74(1-3):51-62.

PMID: 15125992 [PubMed - indexed for MEDLINE]

17:

Proteome survey reveals modularity of the yeast cell machinery.

Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dümpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Schelder M, Schirle M, Remor M, Rudi T, Hooper S, Bauer A, Bouwmeester T, Casari G, Drewes G, Neubauer G, Rick JM, Kuster B, Bork P, Russell RB, Superti-Furga G.

Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.

PMID: 16429126 [PubMed - indexed for MEDLINE]

18:

Integrated analysis of multiple data sources reveals modular structure of biological networks.

Lu H, Shi B, Wu G, Zhang Y, Zhu X, Zhang Z, Liu C, Zhao Y, Wu T, Wang J, Chen R.

Biochem Biophys Res Commun. 2006 Jun 23;345(1):302-9. Epub 2006 Apr 27.

PMID: 16690033 [PubMed - indexed for MEDLINE]

19:

Pathway-specific profiling identifies the NF-kappa B-dependent tumor necrosis factor alpha-regulated genes in epidermal keratinocytes.

Banno T, Gazel A, Blumenberg M.

J Biol Chem. 2005 May 13;280(19):18973-80. Epub 2005 Feb 18.

PMID: 15722350 [PubMed - indexed for MEDLINE]

20:

Modular organization of protein interaction networks.

Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH.

Bioinformatics. 2007 Jan 15;23(2):207-14. Epub 2006 Nov 8. Erratum in: Bioinformatics. 2007 Apr 1;23(7):916.

PMID: 17092991 [PubMed - indexed for MEDLINE]

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