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Items 1 - 20 of 230
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1:

Model selection and efficiency testing for normalization of cDNA microarray data.

Futschik M, Crompton T.

Genome Biol. 2004;5(8):R60. Epub 2004 Jul 30.

PMID: 15287982 [PubMed - indexed for MEDLINE]

2:

Optimized LOWESS normalization parameter selection for DNA microarray data.

Berger JA, Hautaniemi S, Järvinen AK, Edgren H, Mitra SK, Astola J.

BMC Bioinformatics. 2004 Dec 9;5:194.

PMID: 15588297 [PubMed - indexed for MEDLINE]

3:

Effect of local background intensities in the normalization of cDNA microarray data with a skewed expression profiles.

Kim JH, Shin DM, Lee YS.

Exp Mol Med. 2002 Jul 31;34(3):224-32.

PMID: 12216114 [PubMed - indexed for MEDLINE]

4:

Evaluation of normalization methods for cDNA microarray data by k-NN classification.

Wu W, Xing EP, Myers C, Mian IS, Bissell MJ.

BMC Bioinformatics. 2005 Jul 26;6:191.

PMID: 16045803 [PubMed - indexed for MEDLINE]

5:

A new non-linear normalization method for reducing variability in DNA microarray experiments.

Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielser HB, Saxild HH, Nielsen C, Brunak S, Knudsen S.

Genome Biol. 2002 Aug 30;3(9):research0048. Epub 2002 Aug 30.

PMID: 12225587 [PubMed - indexed for MEDLINE]

6:

A novel normalization method for effective removal of systematic variation in microarray data.

Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H.

Nucleic Acids Res. 2006 Mar 9;34(5):e38. Print 2006.

PMID: 16528099 [PubMed - indexed for MEDLINE]

7:

OLIN: optimized normalization, visualization and quality testing of two-channel microarray data.

Futschik ME, Crompton T.

Bioinformatics. 2005 Apr 15;21(8):1724-6. Epub 2004 Dec 7.

PMID: 15585527 [PubMed - indexed for MEDLINE]

8:

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects.

Tseng GC, Oh MK, Rohlin L, Liao JC, Wong WH.

Nucleic Acids Res. 2001 Jun 15;29(12):2549-57.

PMID: 11410663 [PubMed - indexed for MEDLINE]

9:

Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements.

Mecham BH, Klus GT, Strovel J, Augustus M, Byrne D, Bozso P, Wetmore DZ, Mariani TJ, Kohane IS, Szallasi Z.

Nucleic Acids Res. 2004 May 25;32(9):e74.

PMID: 15161944 [PubMed - indexed for MEDLINE]

10:

Microarray standard data set and figures of merit for comparing data processing methods and experiment designs.

He YD, Dai H, Schadt EE, Cavet G, Edwards SW, Stepaniants SB, Duenwald S, Kleinhanz R, Jones AR, Shoemaker DD, Stoughton RB.

Bioinformatics. 2003 May 22;19(8):956-65.

PMID: 12761058 [PubMed - indexed for MEDLINE]

11:

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.

Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP.

Nucleic Acids Res. 2002 Feb 15;30(4):e15.

PMID: 11842121 [PubMed - indexed for MEDLINE]

12:

An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression.

Yue H, Eastman PS, Wang BB, Minor J, Doctolero MH, Nuttall RL, Stack R, Becker JW, Montgomery JR, Vainer M, Johnston R.

Nucleic Acids Res. 2001 Apr 15;29(8):E41-1.

PMID: 11292855 [PubMed - indexed for MEDLINE]

13:

Within the fold: assessing differential expression measures and reproducibility in microarray assays.

Yang IV, Chen E, Hasseman JP, Liang W, Frank BC, Wang S, Sharov V, Saeed AI, White J, Li J, Lee NH, Yeatman TJ, Quackenbush J.

Genome Biol. 2002 Oct 24;3(11):research0062. Epub 2002 Oct 24.

PMID: 12429061 [PubMed - indexed for MEDLINE]

14:

Selection and validation of normalization methods for c-DNA microarrays using within-array replications.

Fan J, Niu Y.

Bioinformatics. 2007 Sep 15;23(18):2391-8. Epub 2007 Jul 27.

PMID: 17660210 [PubMed - indexed for MEDLINE]

15:

Effect of various normalization methods on Applied Biosystems expression array system data.

Barbacioru CC, Wang Y, Canales RD, Sun YA, Keys DN, Chan F, Poulter KA, Samaha RR.

BMC Bioinformatics. 2006 Dec 15;7:533.

PMID: 17173684 [PubMed - indexed for MEDLINE]

16:

Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells.

Yao B, Rakhade SN, Li Q, Ahmed S, Krauss R, Draghici S, Loeb JA.

BMC Bioinformatics. 2004 Jul 23;5:99.

PMID: 15272935 [PubMed - indexed for MEDLINE]

17:

In silico microdissection of microarray data from heterogeneous cell populations.

Lähdesmäki H, Shmulevich L, Dunmire V, Yli-Harja O, Zhang W.

BMC Bioinformatics. 2005 Mar 14;6:54.

PMID: 15766384 [PubMed - indexed for MEDLINE]

18:

Assessment of reliability of microarray data and estimation of signal thresholds using mixture modeling.

Asyali MH, Shoukri MM, Demirkaya O, Khabar KS.

Nucleic Acids Res. 2004 Apr 27;32(8):2323-35. Print 2004.

PMID: 15113873 [PubMed - indexed for MEDLINE]

19:

Post-analysis follow-up and validation of microarray experiments.

Chuaqui RF, Bonner RF, Best CJ, Gillespie JW, Flaig MJ, Hewitt SM, Phillips JL, Krizman DB, Tangrea MA, Ahram M, Linehan WM, Knezevic V, Emmert-Buck MR.

Nat Genet. 2002 Dec;32 Suppl:509-14. Review.

PMID: 12454646 [PubMed - indexed for MEDLINE]

20:

Comparison of normalization methods for CodeLink Bioarray data.

Wu W, Dave N, Tseng GC, Richards T, Xing EP, Kaminski N.

BMC Bioinformatics. 2005 Dec 28;6:309.

PMID: 16381608 [PubMed - indexed for MEDLINE]

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