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1:

Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.

Wang XJ, Reyes JL, Chua NH, Gaasterland T.

Genome Biol. 2004;5(9):R65. Epub 2004 Aug 31.

PMID: 15345049 [PubMed - indexed for MEDLINE]

2:

Cloning and characterization of microRNAs from rice.

Sunkar R, Girke T, Jain PK, Zhu JK.

Plant Cell. 2005 May;17(5):1397-411. Epub 2005 Apr 1.

PMID: 15805478 [PubMed - indexed for MEDLINE]

3:

Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes.

Bonnet E, Wuyts J, Rouzé P, Van de Peer Y.

Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11511-6. Epub 2004 Jul 22. Erratum in: Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4655.

PMID: 15272084 [PubMed - indexed for MEDLINE]

4:

Computational evidence for hundreds of non-conserved plant microRNAs.

Lindow M, Krogh A.

BMC Genomics. 2005 Sep 13;6:119.

PMID: 16159385 [PubMed - indexed for MEDLINE]

5:

Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.

Jones-Rhoades MW, Bartel DP.

Mol Cell. 2004 Jun 18;14(6):787-99.

PMID: 15200956 [PubMed - indexed for MEDLINE]

6:

Conservation and divergence of microRNAs in Populus.

Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE.

BMC Genomics. 2007 Dec 31;8:481.

PMID: 18166134 [PubMed - indexed for MEDLINE]

7:

Computational identification of novel microRNAs and targets in Brassica napus.

Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM.

FEBS Lett. 2007 Apr 3;581(7):1464-74. Epub 2007 Mar 8.

PMID: 17367786 [PubMed - indexed for MEDLINE]

8:

Computational prediction of miRNAs in Arabidopsis thaliana.

Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V, Sundaresan V.

Genome Res. 2005 Jan;15(1):78-91.

PMID: 15632092 [PubMed - indexed for MEDLINE]

9:

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends.

German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ.

Nat Biotechnol. 2008 Aug;26(8):941-6. Epub 2008 Jun 9.

PMID: 18542052 [PubMed - indexed for MEDLINE]

10:

Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa.

Li Y, Li W, Jin YX.

Acta Biochim Biophys Sin (Shanghai). 2005 Feb;37(2):75-87.

PMID: 15685364 [PubMed - indexed for MEDLINE]

11:

Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana.

Wang XJ, Gaasterland T, Chua NH.

Genome Biol. 2005;6(4):R30. Epub 2005 Mar 15.

PMID: 15833117 [PubMed - indexed for MEDLINE]

12:

Antiquity of microRNAs and their targets in land plants.

Axtell MJ, Bartel DP.

Plant Cell. 2005 Jun;17(6):1658-73. Epub 2005 Apr 22.

PMID: 15849273 [PubMed - indexed for MEDLINE]

13:

Identification of 20 microRNAs from Oryza sativa.

Wang JF, Zhou H, Chen YQ, Luo QJ, Qu LH.

Nucleic Acids Res. 2004 Mar 12;32(5):1688-95. Print 2004.

PMID: 15020705 [PubMed - indexed for MEDLINE]

14:

CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.

Park W, Li J, Song R, Messing J, Chen X.

Curr Biol. 2002 Sep 3;12(17):1484-95.

PMID: 12225663 [PubMed - indexed for MEDLINE]

15:

A high-throughput approach for associating MicroRNAs with their activity conditions.

Zilberstein CB, Ziv-Ukelson M, Pinter RY, Yakhini Z.

J Comput Biol. 2006 Mar;13(2):245-66.

PMID: 16597238 [PubMed - indexed for MEDLINE]

16:

Cloning and characterization of microRNAs from wheat (Triticum aestivum L.).

Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q.

Genome Biol. 2007;8(6):R96.

PMID: 17543110 [PubMed - indexed for MEDLINE]

17:

Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis.

Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL.

Plant Cell. 2005 Aug;17(8):2186-203. Epub 2005 Jul 1.

PMID: 15994906 [PubMed - indexed for MEDLINE]

18:

Computational prediction of rice (Oryza sativa) miRNA targets.

Archak S, Nagaraju J.

Genomics Proteomics Bioinformatics. 2007 Dec;5(3-4):196-206.

PMID: 18267301 [PubMed - indexed for MEDLINE]

19:

Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis.

Sunkar R, Zhu JK.

Plant Cell. 2004 Aug;16(8):2001-19. Epub 2004 Jul 16.

PMID: 15258262 [PubMed - indexed for MEDLINE]

20:

Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants.

Lindow M, Jacobsen A, Nygaard S, Mang Y, Krogh A.

PLoS Comput Biol. 2007 Nov;3(11):e238.

PMID: 18052543 [PubMed - indexed for MEDLINE]

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