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Items 1 - 20 of 113
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1:

Spatial patterns of transcriptional activity in the chromosome of Escherichia coli.

Jeong KS, Ahn J, Khodursky AB.

Genome Biol. 2004;5(11):R86. Epub 2004 Oct 27.

PMID: 15535862 [PubMed - indexed for MEDLINE]

2:

Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli.

Peter BJ, Arsuaga J, Breier AM, Khodursky AB, Brown PO, Cozzarelli NR.

Genome Biol. 2004;5(11):R87. Epub 2004 Nov 1.

PMID: 15535863 [PubMed - indexed for MEDLINE]

3:

Periodic transcriptional organization of the E.coli genome.

Képès F.

J Mol Biol. 2004 Jul 23;340(5):957-64.

PMID: 15236959 [PubMed - indexed for MEDLINE]

4:

From genes to genomes: universal scale-invariant properties of microbial chromosome organisation.

Audit B, Ouzounis CA.

J Mol Biol. 2003 Sep 19;332(3):617-33.

PMID: 12963371 [PubMed - indexed for MEDLINE]

5:

RecA can stimulate the relaxation activity of topoisomerase I: Molecular basis of topoisomerase-mediated genome-wide transcriptional responses in Escherichia coli.

Reckinger AR, Jeong KS, Khodursky AB, Hiasa H.

Nucleic Acids Res. 2007;35(1):79-86. Epub 2006 Dec 6.

PMID: 17151069 [PubMed - indexed for MEDLINE]

6:

Analysis of pleiotropic transcriptional profiles: a case study of DNA gyrase inhibition.

Jeong KS, Xie Y, Hiasa H, Khodursky AB.

PLoS Genet. 2006 Sep 29;2(9):e152. Epub 2006 Aug 2.

PMID: 17009874 [PubMed - indexed for MEDLINE]

7:

Long-range periodic patterns in microbial genomes indicate significant multi-scale chromosomal organization.

Allen TE, Price ND, Joyce AR, Palsson BØ.

PLoS Comput Biol. 2006 Jan;2(1):e2. Epub 2006 Jan 13.

PMID: 16410829 [PubMed - indexed for MEDLINE]

8:

Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola.

Viñuelas J, Calevro F, Remond D, Bernillon J, Rahbé Y, Febvay G, Fayard JM, Charles H.

BMC Genomics. 2007 Jun 4;8:143.

PMID: 17547756 [PubMed - indexed for MEDLINE]

9:

FtsK controls metastable recombination provoked by an extra Ter site in the Escherichia coli chromosome terminus.

Louarn JM, Quentin Y.

Mol Microbiol. 2007 Apr;64(1):207-19.

PMID: 17376083 [PubMed - indexed for MEDLINE]

10:

A new in vivo termination function for DNA polymerase I of Escherichia coli K12.

Markovitz A.

Mol Microbiol. 2005 Mar;55(6):1867-82.

PMID: 15752206 [PubMed - indexed for MEDLINE]

11:

Chromosomal periodicity of evolutionarily conserved gene pairs.

Wright MA, Kharchenko P, Church GM, Segrè D.

Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10559-64. Epub 2007 Jun 11.

PMID: 17563360 [PubMed - indexed for MEDLINE]

12:

Topological insulators inhibit diffusion of transcription-induced positive supercoils in the chromosome of Escherichia coli.

Moulin L, Rahmouni AR, Boccard F.

Mol Microbiol. 2005 Jan;55(2):601-10.

PMID: 15659173 [PubMed - indexed for MEDLINE]

13:

[Some principles in the organization of sigma70-specific promoters on the E. coli genome on the basis of electrostatic patterns of promoter DNA]

Kamzolova SG, Sorokin AA, Osipov AA, Beskaravaĭnyĭ PM.

Biofizika. 2005 May-Jun;50(3):444-9. Russian.

PMID: 15977833 [PubMed - indexed for MEDLINE]

14:

Decoding the nucleoid organisation of Bacillus subtilis and Escherichia coli through gene expression data.

Carpentier AS, Torrésani B, Grossmann A, Hénaut A.

BMC Genomics. 2005 Jun 6;6(1):84.

PMID: 15938745 [PubMed - indexed for MEDLINE]

15:

YeeI, a novel protein involved in modulation of the activity of the glucose-phosphotransferase system in Escherichia coli K-12.

Becker AK, Zeppenfeld T, Staab A, Seitz S, Boos W, Morita T, Aiba H, Mahr K, Titgemeyer F, Jahreis K.

J Bacteriol. 2006 Aug;188(15):5439-49.

PMID: 16855233 [PubMed - indexed for MEDLINE]

16:

A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure.

Hardy CD, Cozzarelli NR.

Mol Microbiol. 2005 Sep;57(6):1636-52.

PMID: 16135230 [PubMed - indexed for MEDLINE]

17:

Internal versus external effector and transcription factor gene pairs differ in their relative chromosomal position in Escherichia coli.

Janga SC, Salgado H, Collado-Vides J, Martínez-Antonio A.

J Mol Biol. 2007 Apr 20;368(1):263-72. Epub 2007 Jan 12.

PMID: 17321548 [PubMed - indexed for MEDLINE]

18:

DNA supercoiling and transcription control: a model from the study of suppression of the leu-500 mutation in Salmonella typhimurium topA- strains.

Wu HY, Fang M.

Prog Nucleic Acid Res Mol Biol. 2003;73:43-68. Review.

PMID: 12882514 [PubMed - indexed for MEDLINE]

19:

Chromosomal duplications and cointegrates generated by the bacteriophage lamdba Red system in Escherichia coli K-12.

Poteete AR, Fenton AC, Nadkarni A.

BMC Mol Biol. 2004 Dec 13;5(1):22.

PMID: 15596011 [PubMed - indexed for MEDLINE]

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