Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants.

Palenchar PM, Kouranov A, Lejay LV, Coruzzi GM.

Genome Biol. 2004;5(11):R91. Epub 2004 Oct 29.

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Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis.

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Genome-wide investigation of light and carbon signaling interactions in Arabidopsis.

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Genome Biol. 2004;5(2):R10. Epub 2004 Jan 27.

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Thum KE, Shin MJ, Gutiérrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM.

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Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism.

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Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis.

Price J, Laxmi A, St Martin SK, Jang JC.

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Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA.

Peng M, Bi YM, Zhu T, Rothstein SJ.

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Interactions between nitrogen and cytokinin in the regulation of metabolism and development.

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Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis.

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Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis.

Benedict C, Geisler M, Trygg J, Huner N, Hurry V.

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Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1.

Gutiérrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM.

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Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana.

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The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana.

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Functional-genomics-based identification of genes that regulate Arabidopsis responses to multiple abiotic stresses.

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Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis.

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Immediate-early and delayed cytokinin response genes of Arabidopsis thaliana identified by genome-wide expression profiling reveal novel cytokinin-sensitive processes and suggest cytokinin action through transcriptional cascades.

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