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Items 1 - 20 of 121
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1:

Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana.

Wille A, Zimmermann P, Vranová E, Fürholz A, Laule O, Bleuler S, Hennig L, Prelic A, von Rohr P, Thiele L, Zitzler E, Gruissem W, Bühlmann P.

Genome Biol. 2004;5(11):R92. Epub 2004 Oct 25.

PMID: 15535868 [PubMed - indexed for MEDLINE]

2:

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.

PMID: 15748298 [PubMed - indexed for MEDLINE]

3:

Gradient directed regularization for sparse Gaussian concentration graphs, with applications to inference of genetic networks.

Li H, Gui J.

Biostatistics. 2006 Apr;7(2):302-17. Epub 2005 Dec 2.

PMID: 16326758 [PubMed - indexed for MEDLINE]

4:

An Arabidopsis gene network based on the graphical Gaussian model.

Ma S, Gong Q, Bohnert HJ.

Genome Res. 2007 Nov;17(11):1614-25. Epub 2007 Oct 5.

PMID: 17921353 [PubMed - indexed for MEDLINE]

5:

Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

Shimamura T, Imoto S, Yamaguchi R, Miyano S.

Genome Inform. 2007;19:142-53.

PMID: 18546512 [PubMed - indexed for MEDLINE]

6:

Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.

Lange BM, Ghassemian M.

Plant Mol Biol. 2003 Apr;51(6):925-48.

PMID: 12777052 [PubMed - indexed for MEDLINE]

7:

Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis.

Mendoza L, Alvarez-Buylla ER.

J Theor Biol. 1998 Jul 27;193(2):307-19.

PMID: 9714934 [PubMed - indexed for MEDLINE]

8:

Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks.

Kim CS.

BMC Bioinformatics. 2007 Jul 13;8:251.

PMID: 17626641 [PubMed - indexed for MEDLINE]

9:

Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks.

Werhli AV, Grzegorczyk M, Husmeier D.

Bioinformatics. 2006 Oct 15;22(20):2523-31. Epub 2006 Jul 14.

PMID: 16844710 [PubMed - indexed for MEDLINE]

10:

A steady-state modeling approach to validate an in vivo mechanism of the GAL regulatory network in Saccharomyces cerevisiae.

Verma M, Bhat PJ, Bhartiya S, Venkatesh KV.

Eur J Biochem. 2004 Oct;271(20):4064-74.

PMID: 15479235 [PubMed - indexed for MEDLINE]

11:

Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis.

Gutiérrez RA, Lejay LV, Dean A, Chiaromonte F, Shasha DE, Coruzzi GM.

Genome Biol. 2007;8(1):R7.

PMID: 17217541 [PubMed - indexed for MEDLINE]

12:

Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci.

Keurentjes JJ, Fu J, Terpstra IR, Garcia JM, van den Ackerveken G, Snoek LB, Peeters AJ, Vreugdenhil D, Koornneef M, Jansen RC.

Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1708-13. Epub 2007 Jan 19.

PMID: 17237218 [PubMed - indexed for MEDLINE]

13:

Gene networks in Arabidopsis thaliana for metabolic and environmental functions.

Ma S, Bohnert HJ.

Mol Biosyst. 2008 Mar;4(3):199-204. Epub 2008 Jan 9.

PMID: 18437262 [PubMed - indexed for MEDLINE]

14:

Production of L-ascorbic acid by metabolically engineered Saccharomyces cerevisiae and Zygosaccharomyces bailii.

Sauer M, Branduardi P, Valli M, Porro D.

Appl Environ Microbiol. 2004 Oct;70(10):6086-91.

PMID: 15466554 [PubMed - indexed for MEDLINE]

15:

Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast.

Ramsey SA, Smith JJ, Orrell D, Marelli M, Petersen TW, de Atauri P, Bolouri H, Aitchison JD.

Nat Genet. 2006 Sep;38(9):1082-7. Epub 2006 Aug 27.

PMID: 16936734 [PubMed - indexed for MEDLINE]

16:

Genome evolution: It's all relative.

Kellogg EA.

Nature. 2003 Mar 27;422(6930):383-4. No abstract available.

PMID: 12660762 [PubMed - indexed for MEDLINE]

17:

Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein.

Raghava GP, Han JH.

BMC Bioinformatics. 2005 Mar 17;6:59.

PMID: 15773999 [PubMed - indexed for MEDLINE]

18:

Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors.

Chawade A, Bräutigam M, Lindlöf A, Olsson O, Olsson B.

BMC Genomics. 2007 Sep 2;8:304.

PMID: 17764576 [PubMed - indexed for MEDLINE]

19:

The Arabidopsis thaliana AT PRP39-1 gene, encoding a tetratricopeptide repeat protein with similarity to the yeast pre-mRNA processing protein PRP39, affects flowering time.

Wang C, Tian Q, Hou Z, Mucha M, Aukerman M, Olsen OA.

Plant Cell Rep. 2007 Aug;26(8):1357-66. Epub 2007 Mar 23.

PMID: 17380304 [PubMed - indexed for MEDLINE]

20:

Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.

Herrgård MJ, Lee BS, Portnoy V, Palsson BØ.

Genome Res. 2006 May;16(5):627-35. Epub 2006 Apr 10.

PMID: 16606697 [PubMed - indexed for MEDLINE]

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