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Items 1 - 20 of 112
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1:

How biologically relevant are interaction-based modules in protein networks?

Poyatos JF, Hurst LD.

Genome Biol. 2004;5(11):R93. Epub 2004 Nov 1.

PMID: 15535869 [PubMed - indexed for MEDLINE]

2:

Detecting functional modules in the yeast protein-protein interaction network.

Chen J, Yuan B.

Bioinformatics. 2006 Sep 15;22(18):2283-90. Epub 2006 Jul 12.

PMID: 16837529 [PubMed - indexed for MEDLINE]

3:

The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.

BMC Genomics. 2008 Jun 30;9:313.

PMID: 18590549 [PubMed - indexed for MEDLINE]

4:

Modular organization of protein interaction networks.

Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH.

Bioinformatics. 2007 Jan 15;23(2):207-14. Epub 2006 Nov 8. Erratum in: Bioinformatics. 2007 Apr 1;23(7):916.

PMID: 17092991 [PubMed - indexed for MEDLINE]

5:

Assessing significance of connectivity and conservation in protein interaction networks.

Koyutürk M, Szpankowski W, Grama A.

J Comput Biol. 2007 Jul-Aug;14(6):747-64.

PMID: 17691892 [PubMed - indexed for MEDLINE]

6:

An automated method for finding molecular complexes in large protein interaction networks.

Bader GD, Hogue CW.

BMC Bioinformatics. 2003 Jan 13;4:2. Epub 2003 Jan 13.

PMID: 12525261 [PubMed - indexed for MEDLINE]

7:

Semantic integration to identify overlapping functional modules in protein interaction networks.

Cho YR, Hwang W, Ramanathan M, Zhang A.

BMC Bioinformatics. 2007 Jul 24;8:265.

PMID: 17650343 [PubMed - indexed for MEDLINE]

8:

Global snapshot of a protein interaction network-a percolation based approach.

Chin CS, Samanta MP.

Bioinformatics. 2003 Dec 12;19(18):2413-9.

PMID: 14668225 [PubMed - indexed for MEDLINE]

9:

Comparing protein interaction networks via a graph match-and-split algorithm.

Narayanan M, Karp RM.

J Comput Biol. 2007 Sep;14(7):892-907.

PMID: 17803369 [PubMed - indexed for MEDLINE]

10:

Identification of functional modules from conserved ancestral protein-protein interactions.

Dutkowski J, Tiuryn J.

Bioinformatics. 2007 Jul 1;23(13):i149-58.

PMID: 17646291 [PubMed - indexed for MEDLINE]

11:

Identification of conserved protein complexes based on a model of protein network evolution.

Hirsh E, Sharan R.

Bioinformatics. 2007 Jan 15;23(2):e170-6.

PMID: 17237088 [PubMed - indexed for MEDLINE]

12:

Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

Matthews LR, Vaglio P, Reboul J, Ge H, Davis BP, Garrels J, Vincent S, Vidal M.

Genome Res. 2001 Dec;11(12):2120-6.

PMID: 11731503 [PubMed - indexed for MEDLINE]

13:

Pairwise alignment of protein interaction networks.

Koyutürk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, Grama A.

J Comput Biol. 2006 Mar;13(2):182-99.

PMID: 16597234 [PubMed - indexed for MEDLINE]

14:

Three-dimensional visualization of protein interaction networks.

Han K, Byun Y.

Comput Biol Med. 2004 Mar;34(2):127-39.

PMID: 14972632 [PubMed - indexed for MEDLINE]

15:

Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques.

Ding C, He X, Xiong H, Peng H, Holbrook SR.

Int J Data Min Bioinform. 2006;1(2):162-77.

PMID: 18399069 [PubMed - indexed for MEDLINE]

16:

Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactions.

Beltrao P, Serrano L.

PLoS Comput Biol. 2005 Aug;1(3):e26. Epub 2005 Aug 12.

PMID: 16110343 [PubMed - indexed for MEDLINE]

17:

Integrated analysis of multiple data sources reveals modular structure of biological networks.

Lu H, Shi B, Wu G, Zhang Y, Zhu X, Zhang Z, Liu C, Zhao Y, Wu T, Wang J, Chen R.

Biochem Biophys Res Commun. 2006 Jun 23;345(1):302-9. Epub 2006 Apr 27.

PMID: 16690033 [PubMed - indexed for MEDLINE]

18:

A lock-and-key model for protein-protein interactions.

Morrison JL, Breitling R, Higham DJ, Gilbert DR.

Bioinformatics. 2006 Aug 15;22(16):2012-9. Epub 2006 Jun 20.

PMID: 16787977 [PubMed - indexed for MEDLINE]

19:

Detecting conserved interaction patterns in biological networks.

Koyutürk M, Kim Y, Subramaniam S, Szpankowski W, Grama A.

J Comput Biol. 2006 Sep;13(7):1299-322.

PMID: 17037960 [PubMed - indexed for MEDLINE]

20:

Modular organization of cellular networks.

Rives AW, Galitski T.

Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):1128-33. Epub 2003 Jan 21.

PMID: 12538875 [PubMed - indexed for MEDLINE]

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