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Items 1 - 20 of 135
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1:

Consensus clustering and functional interpretation of gene-expression data.

Swift S, Tucker A, Vinciotti V, Martin N, Orengo C, Liu X, Kellam P.

Genome Biol. 2004;5(11):R94. Epub 2004 Nov 1.

PMID: 15535870 [PubMed - indexed for MEDLINE]

2:

cDNA microarray analysis of bovine embryo gene expression profiles during the pre-implantation period.

Ushizawa K, Herath CB, Kaneyama K, Shiojima S, Hirasawa A, Takahashi T, Imai K, Ochiai K, Tokunaga T, Tsunoda Y, Tsujimoto G, Hashizume K.

Reprod Biol Endocrinol. 2004 Nov 24;2:77.

PMID: 15560851 [PubMed - indexed for MEDLINE]

3:

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.

Datta S, Datta S.

BMC Bioinformatics. 2006 Aug 31;7:397.

PMID: 16945146 [PubMed - indexed for MEDLINE]

4:

Adaptive quality-based clustering of gene expression profiles.

De Smet F, Mathys J, Marchal K, Thijs G, De Moor B, Moreau Y.

Bioinformatics. 2002 May;18(5):735-46.

PMID: 12050070 [PubMed - indexed for MEDLINE]

5:

Clustering of time-course gene expression data using a mixed-effects model with B-splines.

Luan Y, Li H.

Bioinformatics. 2003 Mar 1;19(4):474-82.

PMID: 12611802 [PubMed - indexed for MEDLINE]

6:

Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments.

Liu H, Tarima S, Borders AS, Getchell TV, Getchell ML, Stromberg AJ.

BMC Bioinformatics. 2005 Apr 25;6:106.

PMID: 15850479 [PubMed - indexed for MEDLINE]

7:

Dynamic model-based clustering for time-course gene expression data.

Wu FX, Zhang WJ, Kusalik AJ.

J Bioinform Comput Biol. 2005 Aug;3(4):821-36.

PMID: 16078363 [PubMed - indexed for MEDLINE]

8:

Mixture models with multiple levels, with application to the analysis of multifactor gene expression data.

Jörnsten R, Keleş S.

Biostatistics. 2008 Jul;9(3):540-54. Epub 2008 Feb 5.

PMID: 18256042 [PubMed - indexed for MEDLINE]

9:

Model-based clustering on the unit sphere with an illustration using gene expression profiles.

Dortet-Bernadet JL, Wicker N.

Biostatistics. 2008 Jan;9(1):66-80. Epub 2007 Apr 27.

PMID: 17468207 [PubMed - indexed for MEDLINE]

10:

Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression data.

Nair TM, Zheng CL, Fink JL, Stuart RO, Gribskov M.

Comput Biol Chem. 2003 Dec;27(6):565-74.

PMID: 14667784 [PubMed - indexed for MEDLINE]

11:

Statistically based postprocessing of phylogenetic analysis by clustering.

Stockham C, Wang LS, Warnow T.

Bioinformatics. 2002;18 Suppl 1:S285-93.

PMID: 12169558 [PubMed - indexed for MEDLINE]

12:

Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data.

Huang D, Pan W.

Bioinformatics. 2006 May 15;22(10):1259-68. Epub 2006 Feb 24.

PMID: 16500932 [PubMed - indexed for MEDLINE]

13:

Noise-robust soft clustering of gene expression time-course data.

Futschik ME, Carlisle B.

J Bioinform Comput Biol. 2005 Aug;3(4):965-88.

PMID: 16078370 [PubMed - indexed for MEDLINE]

14:

Clustering microarray gene expression data using weighted Chinese restaurant process.

Qin ZS.

Bioinformatics. 2006 Aug 15;22(16):1988-97. Epub 2006 Jun 9.

PMID: 16766561 [PubMed - indexed for MEDLINE]

15:

Microarray and comparative genomics-based identification of genes and gene regulatory regions of the mouse immune system.

Hutton JJ, Jegga AG, Kong S, Gupta A, Ebert C, Williams S, Katz JD, Aronow BJ.

BMC Genomics. 2004 Oct 25;5(1):82.

PMID: 15504237 [PubMed - indexed for MEDLINE]

16:

Scoring clustering solutions by their biological relevance.

Gat-Viks I, Sharan R, Shamir R.

Bioinformatics. 2003 Dec 12;19(18):2381-9.

PMID: 14668221 [PubMed - indexed for MEDLINE]

17:

Incorporating gene functions as priors in model-based clustering of microarray gene expression data.

Pan W.

Bioinformatics. 2006 Apr 1;22(7):795-801. Epub 2006 Jan 24.

PMID: 16434443 [PubMed - indexed for MEDLINE]

18:

Effect of data normalization on fuzzy clustering of DNA microarray data.

Kim SY, Lee JW, Bae JS.

BMC Bioinformatics. 2006 Mar 14;7:134.

PMID: 16533412 [PubMed - indexed for MEDLINE]

19:

Clustering short time series gene expression data.

Ernst J, Nau GJ, Bar-Joseph Z.

Bioinformatics. 2005 Jun;21 Suppl 1:i159-68.

PMID: 15961453 [PubMed - indexed for MEDLINE]

20:

Network constrained clustering for gene microarray data.

Zhu D, Hero AO, Cheng H, Khanna R, Swaroop A.

Bioinformatics. 2005 Nov 1;21(21):4014-20. Epub 2005 Sep 1.

PMID: 16141248 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 135
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