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1:

The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information.

Smith CL, Goldsmith CA, Eppig JT.

Genome Biol. 2005;6(1):R7. Epub 2004 Dec 15.

PMID: 15642099 [PubMed - indexed for MEDLINE]

2:

Mouse SNP Miner: an annotated database of mouse functional single nucleotide polymorphisms.

Reuveni E, Ramensky VE, Gross C.

BMC Genomics. 2007 Jan 21;8:24.

PMID: 17239255 [PubMed - indexed for MEDLINE]

3:

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.

PMID: 17135206 [PubMed - indexed for MEDLINE]

4:

The Mouse Genome Database (MGD): mouse biology and model systems.

Bult CJ, Eppig JT, Kadin JA, Richardson JE, Blake JA; Mouse Genome Database Group.

Nucleic Acids Res. 2008 Jan;36(Database issue):D724-8. Epub 2007 Dec 23.

PMID: 18158299 [PubMed - indexed for MEDLINE]

5:

PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing.

Lussier Y, Borlawsky T, Rappaport D, Liu Y, Friedman C.

Pac Symp Biocomput. 2006:64-75.

PMID: 17094228 [PubMed - indexed for MEDLINE]

6:

Animal trait ontology: The importance and usefulness of a unified trait vocabulary for animal species.

Hughes LM, Bao J, Hu ZL, Honavar V, Reecy JM.

J Anim Sci. 2008 Jun;86(6):1485-91. Epub 2008 Feb 13.

PMID: 18272850 [PubMed - indexed for MEDLINE]

7:

The Rat Genome Database (RGD): developments towards a phenome database.

de la Cruz N, Bromberg S, Pasko D, Shimoyama M, Twigger S, Chen J, Chen CF, Fan C, Foote C, Gopinath GR, Harris G, Hughes A, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nie J, Nigam R, Petri V, Reilly D, Wang W, Wu W, Zuniga-Meyer A, Zhao L, Kwitek A, Tonellato P, Jacob H.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D485-91.

PMID: 15608243 [PubMed - indexed for MEDLINE]

8:

Phenosite: a web database integrating the mouse phenotyping platform and the experimental procedures in mice.

Masuya H, Yoshikawa S, Heida N, Toyoda T, Wakana S, Shiroishi T.

J Bioinform Comput Biol. 2007 Dec;5(6):1173-91.

PMID: 18172924 [PubMed - indexed for MEDLINE]

9:

The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease.

Robinson PN, Köhler S, Bauer S, Seelow D, Horn D, Mundlos S.

Am J Hum Genet. 2008 Nov;83(5):610-5. Epub 2008 Oct 23.

PMID: 18950739 [PubMed - indexed for MEDLINE]

10:

Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists.

Masseroli M, Galati O, Manzotti M, Gibert K, Pinciroli F.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S18.

PMID: 16351744 [PubMed - indexed for MEDLINE]

11:

The Sequence Ontology: a tool for the unification of genome annotations.

Eilbeck K, Lewis SE, Mungall CJ, Yandell M, Stein L, Durbin R, Ashburner M.

Genome Biol. 2005;6(5):R44. Epub 2005 Apr 29.

PMID: 15892872 [PubMed - indexed for MEDLINE]

12:

Ontology annotation: mapping genomic regions to biological function.

Thomas PD, Mi H, Lewis S.

Curr Opin Chem Biol. 2007 Feb;11(1):4-11. Epub 2007 Jan 5. Review.

PMID: 17208035 [PubMed - indexed for MEDLINE]

13:

Pathbase: a database of mutant mouse pathology.

Schofield PN, Bard JB, Booth C, Boniver J, Covelli V, Delvenne P, Ellender M, Engstrom W, Goessner W, Gruenberger M, Hoefler H, Hopewell J, Mancuso M, Mothersill C, Potten CS, Quintanilla-Fend L, Rozell B, Sariola H, Sundberg JP, Ward A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D512-5.

PMID: 14681470 [PubMed - indexed for MEDLINE]

14:

Management and analysis of genomic functional and phenotypic controlled annotations to support biomedical investigation and practice.

Masseroli M.

IEEE Trans Inf Technol Biomed. 2007 Jul;11(4):376-85.

PMID: 17674620 [PubMed - indexed for MEDLINE]

15:

Searching the Mouse Genome Informatics (MGI) resources for information on mouse biology from genotype to phenotype.

Shaw D.

Curr Protoc Bioinformatics. 2004 May;Chapter 1:Unit 1.7.

PMID: 18428715 [PubMed - indexed for MEDLINE]

16:

Predicting gene function from patterns of annotation.

King OD, Foulger RE, Dwight SS, White JV, Roth FP.

Genome Res. 2003 May;13(5):896-904. Epub 2003 Apr 14.

PMID: 12695322 [PubMed - indexed for MEDLINE]

17:

Gene Ontology annotations: what they mean and where they come from.

Hill DP, Smith B, McAndrews-Hill MS, Blake JA.

BMC Bioinformatics. 2008 Apr 29;9 Suppl 5:S2.

PMID: 18460184 [PubMed - indexed for MEDLINE]

18:

MGD: the Mouse Genome Database.

Blake JA, Richardson JE, Bult CJ, Kadin JA, Eppig JT; Mouse Genome Database Group.

Nucleic Acids Res. 2003 Jan 1;31(1):193-5.

PMID: 12519980 [PubMed - indexed for MEDLINE]

19:

The Rat Genome Database, update 2007--easing the path from disease to data and back again.

Twigger SN, Shimoyama M, Bromberg S, Kwitek AE, Jacob HJ; RGD Team.

Nucleic Acids Res. 2007 Jan;35(Database issue):D658-62. Epub 2006 Dec 6.

PMID: 17151068 [PubMed - indexed for MEDLINE]

20:

Gene ontology annotation by density and gravitation models.

Hou WJ, Lin KH, Chen HH.

Genome Inform. 2006;17(2):110-20.

PMID: 17503384 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 156
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