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Items 1 - 20 of 173
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1:

Genome-wide analysis of the context-dependence of regulatory networks.

Papp B, Oliver S.

Genome Biol. 2005;6(2):206. Epub 2005 Jan 27. Review.

PMID: 15693953 [PubMed - indexed for MEDLINE]

2:

Genome-wide location and function of DNA binding proteins.

Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, Simon I, Zeitlinger J, Schreiber J, Hannett N, Kanin E, Volkert TL, Wilson CJ, Bell SP, Young RA.

Science. 2000 Dec 22;290(5500):2306-9.

PMID: 11125145 [PubMed - indexed for MEDLINE]

3:

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

PMID: 12399584 [PubMed - indexed for MEDLINE]

4:

Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae.

Yarragudi A, Parfrey LW, Morse RH.

Nucleic Acids Res. 2007;35(1):193-202. Epub 2006 Dec 7.

PMID: 17158163 [PubMed - indexed for MEDLINE]

5:

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.

Gao F, Foat BC, Bussemaker HJ.

BMC Bioinformatics. 2004 Mar 18;5:31.

PMID: 15113405 [PubMed - indexed for MEDLINE]

6:

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

Nat Biotechnol. 2003 Nov;21(11):1337-42. Epub 2003 Oct 12.

PMID: 14555958 [PubMed - indexed for MEDLINE]

7:

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.

Teixeira MC, Monteiro P, Jain P, Tenreiro S, Fernandes AR, Mira NP, Alenquer M, Freitas AT, Oliveira AL, Sá-Correia I.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D446-51.

PMID: 16381908 [PubMed - indexed for MEDLINE]

8:

A stress regulatory network for co-ordinated activation of proteasome expression mediated by yeast heat shock transcription factor.

Hahn JS, Neef DW, Thiele DJ.

Mol Microbiol. 2006 Apr;60(1):240-51.

PMID: 16556235 [PubMed - indexed for MEDLINE]

9:

Deciphering gene expression regulatory networks.

Wyrick JJ, Young RA.

Curr Opin Genet Dev. 2002 Apr;12(2):130-6. Review.

PMID: 11893484 [PubMed - indexed for MEDLINE]

10:

Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae.

Yu X, Lin J, Masuda T, Esumi N, Zack DJ, Qian J.

Nucleic Acids Res. 2006 Feb 6;34(3):917-27. Print 2006.

PMID: 16464824 [PubMed - indexed for MEDLINE]

11:

Discovering regulatory binding-site modules using rule-based learning.

Hvidsten TR, Wilczyński B, Kryshtafovych A, Tiuryn J, Komorowski J, Fidelis K.

Genome Res. 2005 Jun;15(6):856-66.

PMID: 15930496 [PubMed - indexed for MEDLINE]

12:

The promoter connection.

Werner T.

Nat Genet. 2001 Oct;29(2):105-6.

PMID: 11586286 [PubMed - indexed for MEDLINE]

13:

Reconstructing genetic networks in yeast.

Zhang Z, Gerstein M.

Nat Biotechnol. 2003 Nov;21(11):1295-7. No abstract available.

PMID: 14595359 [PubMed - indexed for MEDLINE]

14:

A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription.

Steinfeld I, Shamir R, Kupiec M.

Nat Genet. 2007 Mar;39(3):303-9.

PMID: 17325681 [PubMed - indexed for MEDLINE]

15:

Expression dynamics of a cellular metabolic network.

Kharchenko P, Church GM, Vitkup D.

Mol Syst Biol. 2005;1:2005.0016. Epub 2005 Aug 2.

PMID: 16729051 [PubMed - indexed for MEDLINE]

16:

Transcriptional networks: reverse-engineering gene regulation on a global scale.

Chua G, Robinson MD, Morris Q, Hughes TR.

Curr Opin Microbiol. 2004 Dec;7(6):638-46. Review.

PMID: 15556037 [PubMed - indexed for MEDLINE]

17:

Sfl1p acts as an activator of the HSP30 gene in Saccharomyces cerevisiae.

Galeote VA, Alexandre H, Bach B, Delobel P, Dequin S, Blondin B.

Curr Genet. 2007 Aug;52(2):55-63. Epub 2007 Jun 27.

PMID: 17594096 [PubMed - indexed for MEDLINE]

18:

Genetical genomics analysis of a yeast segregant population for transcription network inference.

Bing N, Hoeschele I.

Genetics. 2005 Jun;170(2):533-42. Epub 2005 Mar 21.

PMID: 15781693 [PubMed - indexed for MEDLINE]

19:

The design of transcription-factor binding sites is affected by combinatorial regulation.

Bilu Y, Barkai N.

Genome Biol. 2005;6(12):R103. Epub 2005 Dec 2.

PMID: 16356266 [PubMed - indexed for MEDLINE]

20:

Sequencing and comparison of yeast species to identify genes and regulatory elements.

Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES.

Nature. 2003 May 15;423(6937):241-54.

PMID: 12748633 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 173
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