Turn recording back on
Anatomical ontologies: names and places in biology.
Baldock R, Burger A.
Genome Biol. 2005;6(4):108. Epub 2005 Mar 15.
PMID: 15833128 [PubMed - indexed for MEDLINE]
Related Articles Free article in PMC
Anatomics: the intersection of anatomy and bioinformatics.
Bard JB.
J Anat. 2005 Jan;206(1):1-16. Review.
PMID: 15679867 [PubMed - indexed for MEDLINE]
Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies.
Hoehndorf R, Loebe F, Kelso J, Herre H.
BMC Bioinformatics. 2007 Oct 9;8:377.
PMID: 17925014 [PubMed - indexed for MEDLINE]
Desiderata for domain reference ontologies in biomedicine.
Burgun A.
J Biomed Inform. 2006 Jun;39(3):307-13. Epub 2005 Oct 17.
PMID: 16266830 [PubMed - indexed for MEDLINE]
Related Articles
Ontologies: Formalising biological knowledge for bioinformatics.
Bard J.
Bioessays. 2003 May;25(5):501-6.
PMID: 12717820 [PubMed - indexed for MEDLINE]
Beyond the data deluge: data integration and bio-ontologies.
Blake JA, Bult CJ.
J Biomed Inform. 2006 Jun;39(3):314-20. Epub 2006 Feb 21.
PMID: 16564748 [PubMed - indexed for MEDLINE]
Integrating partonomic hierarchies in anatomy ontologies.
Burger A, Davidson D, Yang Y, Baldock R.
BMC Bioinformatics. 2004 Nov 26;5:184.
PMID: 15566564 [PubMed - indexed for MEDLINE]
Are the current ontologies in biology good ontologies?
Soldatova LN, King RD.
Nat Biotechnol. 2005 Sep;23(9):1095-8.
PMID: 16151402 [PubMed - indexed for MEDLINE]
Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures.
Koehler J, Rawlings C, Verrier P, Mitchell R, Skusa A, Ruegg A, Philippi S.
In Silico Biol. 2005;5(1):33-44.
PMID: 15972003 [PubMed - indexed for MEDLINE]
Ontologies for data and knowledge sharing in biology: plant ROS signaling as a case study.
Strizh IG.
Bioessays. 2006 Feb;28(2):199-210.
PMID: 16435295 [PubMed - indexed for MEDLINE]
Ontologies of developmental anatomy: their current and future roles.
Bard J, Winter R.
Brief Bioinform. 2001 Sep;2(3):289-99.
PMID: 11589589 [PubMed - indexed for MEDLINE]
Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology.
Aranguren ME, Antezana E, Kuiper M, Stevens R.
BMC Bioinformatics. 2008 Apr 29;9 Suppl 5:S1.
PMID: 18460183 [PubMed - indexed for MEDLINE]
Building mouse phenotype ontologies.
Gkoutos GV, Green EC, Mallon AM, Hancock JM, Davidson D.
Pac Symp Biocomput. 2004:178-89.
PMID: 14992502 [PubMed - indexed for MEDLINE]
Bio-ontologies: current trends and future directions.
Bodenreider O, Stevens R.
Brief Bioinform. 2006 Sep;7(3):256-74. Epub 2006 Aug 9. Review.
PMID: 16899495 [PubMed - indexed for MEDLINE]
PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing.
Lussier Y, Borlawsky T, Rappaport D, Liu Y, Friedman C.
Pac Symp Biocomput. 2006:64-75.
PMID: 17094228 [PubMed - indexed for MEDLINE]
Anatomical reasoning in the informatics age: Principles, ontologies, and agendas.
Trelease RB.
Anat Rec B New Anat. 2006 Mar;289(2):72-84.
PMID: 16568425 [PubMed - in process]
Formalizing concepts of species, sex and developmental stage in anatomical ontologies.
Aitken S.
Bioinformatics. 2005 Jun 1;21(11):2773-9. Epub 2005 Mar 29.
PMID: 15797906 [PubMed - indexed for MEDLINE]
Of mice and men: aligning mouse and human anatomies.
Bodenreider O, Hayamizu TF, Ringwald M, De Coronado S, Zhang S.
AMIA Annu Symp Proc. 2005:61-5.
PMID: 16779002 [PubMed - indexed for MEDLINE]
Knowledge Zone: a public repository of peer-reviewed biomedical ontologies.
Supekar K, Rubin D, Noy N, Musen M.
Stud Health Technol Inform. 2007;129(Pt 1):812-6.
PMID: 17911829 [PubMed - indexed for MEDLINE]
Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference.
Zhang S, Bodenreider O.
AMIA Annu Symp Proc. 2005:864-8.
PMID: 16779163 [PubMed - indexed for MEDLINE]