The Sequence Ontology: a tool for the unification of genome annotations.

Eilbeck K, Lewis SE, Mungall CJ, Yandell M, Stein L, Durbin R, Ashburner M.

Genome Biol. 2005;6(5):R44. Epub 2005 Apr 29.

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Additional gene ontology structure for improved biological reasoning.

Myhre S, Tveit H, Mollestad T, Laegreid A.

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Schlueter SD, Wilkerson MD, Dong Q, Brendel V.

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Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.

Teber ET, Crawford E, Bolton KB, Van Dyk D, Schofield PR, Kapoor V, Church WB.

BMC Bioinformatics. 2006 Jan 23;7:33.

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EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes.

Bhasi A, Pandey RV, Utharasamy SP, Senapathy P.

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Gene Ontology annotations: what they mean and where they come from.

Hill DP, Smith B, McAndrews-Hill MS, Blake JA.

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The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information.

Smith CL, Goldsmith CA, Eppig JT.

Genome Biol. 2005;6(1):R7. Epub 2004 Dec 15.

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Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary.

Mao X, Cai T, Olyarchuk JG, Wei L.

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PeerGAD: a peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences.

D'Ascenzo MD, Collmer A, Martin GB.

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Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.

Black DL.

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Sequence ontology annotation guide.

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The Gene Ontology (GO) project in 2006.

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AceView: a comprehensive cDNA-supported gene and transcripts annotation.

Thierry-Mieg D, Thierry-Mieg J.

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Management and analysis of genomic functional and phenotypic controlled annotations to support biomedical investigation and practice.

Masseroli M.

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DynGO: a tool for visualizing and mining of Gene Ontology and its associations.

Liu H, Hu ZZ, Wu CH.

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WEGO: a web tool for plotting GO annotations.

Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, Wang J, Li S, Li R, Bolund L, Wang J.

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Restauro-G: a rapid genome re-annotation system for comparative genomics.

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