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1:

Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins.

Freilich S, Massingham T, Bhattacharyya S, Ponsting H, Lyons PA, Freeman TC, Thornton JM.

Genome Biol. 2005;6(7):R56. Epub 2005 Jun 29.

PMID: 15998445 [PubMed - indexed for MEDLINE]

2:

Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution.

Liao BY, Zhang J.

Mol Biol Evol. 2006 Jun;23(6):1119-28. Epub 2006 Mar 6.

PMID: 16520335 [PubMed - indexed for MEDLINE]

3:

Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteins.

Freilich S, Massingham T, Blanc E, Goldovsky L, Thornton JM.

Genome Biol. 2006;7(10):R89. Epub 2006 Oct 9.

PMID: 17029626 [PubMed - indexed for MEDLINE]

4:

The functional landscape of mouse gene expression.

Zhang W, Morris QD, Chang R, Shai O, Bakowski MA, Mitsakakis N, Mohammad N, Robinson MD, Zirngibl R, Somogyi E, Laurin N, Eftekharpour E, Sat E, Grigull J, Pan Q, Peng WT, Krogan N, Greenblatt J, Fehlings M, van der Kooy D, Aubin J, Bruneau BG, Rossant J, Blencowe BJ, Frey BJ, Hughes TR.

J Biol. 2004;3(5):21. Epub 2004 Dec 6.

PMID: 15588312 [PubMed - indexed for MEDLINE]

5:

Modular genes with metazoan-specific domains have increased tissue specificity.

Cohen-Gihon I, Lancet D, Yanai I.

Trends Genet. 2005 Apr;21(4):210-3.

PMID: 15797615 [PubMed - indexed for MEDLINE]

6:

Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family.

Manfield IW, Devlin PF, Jen CH, Westhead DR, Gilmartin PM.

Plant Physiol. 2007 Feb;143(2):941-58. Epub 2007 Jan 5.

PMID: 17208962 [PubMed - indexed for MEDLINE]

7:

Genetic structure and evolution of the Vps25 family, a yeast ESCRT-II component.

Slater R, Bishop NE.

BMC Evol Biol. 2006 Aug 4;6:59.

PMID: 16889659 [PubMed - indexed for MEDLINE]

8:

Similar gene expression profiles do not imply similar tissue functions.

Yanai I, Korbel JO, Boue S, McWeeney SK, Bork P, Lercher MJ.

Trends Genet. 2006 Mar;22(3):132-8. Epub 2006 Feb 9. Review.

PMID: 16480787 [PubMed - indexed for MEDLINE]

9:

The metazoan history of the COE transcription factors. Selection of a variant HLH motif by mandatory inclusion of a duplicated exon in vertebrates.

Daburon V, Mella S, Plouhinec JL, Mazan S, Crozatier M, Vincent A.

BMC Evol Biol. 2008 May 2;8:131.

PMID: 18454855 [PubMed - indexed for MEDLINE]

10:

Tissue-specific mRNA expression profiling in grape berry tissues.

Grimplet J, Deluc LG, Tillett RL, Wheatley MD, Schlauch KA, Cramer GR, Cushman JC.

BMC Genomics. 2007 Jun 21;8:187.

PMID: 17584945 [PubMed - indexed for MEDLINE]

12:

Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus.

Laukaitis CM, Dlouhy SR, Emes RD, Ponting CP, Karn RC.

BMC Evol Biol. 2005 Jul 14;5:40.

PMID: 16018816 [PubMed - indexed for MEDLINE]

13:

Specific age-related signatures in Drosophila body parts transcriptome.

Girardot F, Lasbleiz C, Monnier V, Tricoire H.

BMC Genomics. 2006 Apr 4;7:69.

PMID: 16584578 [PubMed - indexed for MEDLINE]

14:

Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes.

Lee S, Kohane I, Kasif S.

BMC Genomics. 2005 Nov 27;6:168.

PMID: 16309559 [PubMed - indexed for MEDLINE]

15:

Tissue-specific functions based on information content of gene ontology using cap analysis gene expression.

Maekawa S, Matsumoto A, Takenaka Y, Matsuda H.

Med Biol Eng Comput. 2007 Nov;45(11):1029-36. Epub 2007 Oct 30.

PMID: 17968606 [PubMed - indexed for MEDLINE]

16:

Expression patterns of protein kinases correlate with gene architecture and evolutionary rates.

Ogurtsov AY, Mariño-Ramírez L, Johnson GR, Landsman D, Shabalina SA, Spiridonov NA.

PLoS ONE. 2008;3(10):e3599. Epub 2008 Oct 31.

PMID: 18974838 [PubMed - in process]

17:

Conservation of regional gene expression in mouse and human brain.

Strand AD, Aragaki AK, Baquet ZC, Hodges A, Cunningham P, Holmans P, Jones KR, Jones L, Kooperberg C, Olson JM.

PLoS Genet. 2007 Apr 20;3(4):e59.

PMID: 17447843 [PubMed - indexed for MEDLINE]

18:

Tissue-driven hypothesis of genomic evolution and sequence-expression correlations.

Gu X, Su Z.

Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2779-84. Epub 2007 Feb 14.

PMID: 17301236 [PubMed - indexed for MEDLINE]

19:

A biphasic pattern of gene expression during mouse retina development.

Zhang SS, Xu X, Liu MG, Zhao H, Soares MB, Barnstable CJ, Fu XY.

BMC Dev Biol. 2006 Oct 17;6:48.

PMID: 17044933 [PubMed - indexed for MEDLINE]

20:

Characterization of Smoc-1 uncovers two transcript variants showing differential tissue and age specific expression in Bubalus bubalis.

Srivastava J, Premi S, Kumar S, Parwez I, Ali S.

BMC Genomics. 2007 Nov 28;8:436.

PMID: 18042303 [PubMed - indexed for MEDLINE]

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