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1:

Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray.

Carter MG, Sharov AA, VanBuren V, Dudekula DB, Carmack CE, Nelson C, Ko MS.

Genome Biol. 2005;6(7):R61. Epub 2005 Jun 30.

PMID: 15998450 [PubMed - indexed for MEDLINE]

2:

A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus.

Charbonnier Y, Gettler B, François P, Bento M, Renzoni A, Vaudaux P, Schlegel W, Schrenzel J.

BMC Genomics. 2005 Jun 17;6:95.

PMID: 15963225 [PubMed - indexed for MEDLINE]

3:

A novel design of whole-genome microarray probes for Saccharomyces cerevisiae which minimizes cross-hybridization.

Talla E, Tekaia F, Brino L, Dujon B.

BMC Genomics. 2003 Sep 22;4(1):38.

PMID: 14499002 [PubMed - indexed for MEDLINE]

4:

Transcript profiling of human platelets using microarray and serial analysis of gene expression.

Gnatenko DV, Dunn JJ, McCorkle SR, Weissmann D, Perrotta PL, Bahou WF.

Blood. 2003 Mar 15;101(6):2285-93. Epub 2002 Nov 14.

PMID: 12433680 [PubMed - indexed for MEDLINE]

5:

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer.

Hughes TR, Mao M, Jones AR, Burchard J, Marton MJ, Shannon KW, Lefkowitz SM, Ziman M, Schelter JM, Meyer MR, Kobayashi S, Davis C, Dai H, He YD, Stephaniants SB, Cavet G, Walker WL, West A, Coffey E, Shoemaker DD, Stoughton R, Blanchard AP, Friend SH, Linsley PS.

Nat Biotechnol. 2001 Apr;19(4):342-7.

PMID: 11283592 [PubMed - indexed for MEDLINE]

6:

Universal external RNA controls for microbial gene expression analysis using microarray and qRT-PCR.

Liu ZL, Slininger PJ.

J Microbiol Methods. 2007 Mar;68(3):486-96. Epub 2006 Dec 14.

PMID: 17173990 [PubMed - indexed for MEDLINE]

8:

Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.

PMID: 16253343 [PubMed - indexed for MEDLINE]

9:

Empirical analysis of transcriptional activity in the Arabidopsis genome.

Yamada K, Lim J, Dale JM, Chen H, Shinn P, Palm CJ, Southwick AM, Wu HC, Kim C, Nguyen M, Pham P, Cheuk R, Karlin-Newmann G, Liu SX, Lam B, Sakano H, Wu T, Yu G, Miranda M, Quach HL, Tripp M, Chang CH, Lee JM, Toriumi M, Chan MM, Tang CC, Onodera CS, Deng JM, Akiyama K, Ansari Y, Arakawa T, Banh J, Banno F, Bowser L, Brooks S, Carninci P, Chao Q, Choy N, Enju A, Goldsmith AD, Gurjal M, Hansen NF, Hayashizaki Y, Johnson-Hopson C, Hsuan VW, Iida K, Karnes M, Khan S, Koesema E, Ishida J, Jiang PX, Jones T, Kawai J, Kamiya A, Meyers C, Nakajima M, Narusaka M, Seki M, Sakurai T, Satou M, Tamse R, Vaysberg M, Wallender EK, Wong C, Yamamura Y, Yuan S, Shinozaki K, Davis RW, Theologis A, Ecker JR.

Science. 2003 Oct 31;302(5646):842-6.

PMID: 14593172 [PubMed - indexed for MEDLINE]

10:

RNA transcript profiling during zygotic gene activation in the preimplantation mouse embryo.

Zeng F, Schultz RM.

Dev Biol. 2005 Jul 1;283(1):40-57.

PMID: 15975430 [PubMed - indexed for MEDLINE]

11:

Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome.

Havilio M, Levanon EY, Lerman G, Kupiec M, Eisenberg E.

BMC Genomics. 2005 Jun 16;6(1):93.

PMID: 15960846 [PubMed - indexed for MEDLINE]

12:

Whole genome genetic-typing in yeast using high-density oligonucleotide arrays.

Winzeler EA, Lee B, McCusker JH, Davis RW.

Parasitology. 1999;118 Suppl:S73-80.

PMID: 10466139 [PubMed - indexed for MEDLINE]

13:

Mining the human genome using microarrays of open reading frames.

Penn SG, Rank DR, Hanzel DK, Barker DL.

Nat Genet. 2000 Nov;26(3):315-8.

PMID: 11062470 [PubMed - indexed for MEDLINE]

14:

Expression profiling using a hexamer-based universal microarray.

Roth ME, Feng L, McConnell KJ, Schaffer PJ, Guerra CE, Affourtit JP, Piper KR, Guccione L, Hariharan J, Ford MJ, Powell SW, Krishnaswamy H, Lane J, Guccione L, Intrieri G, Merkel JS, Perbost C, Valerio A, Zolla B, Graham CD, Hnath J, Michaelson C, Wang R, Ying B, Halling C, Parman CE, Raha D, Orr B, Jedrzkiewicz B, Liao J, Tevelev A, Mattessich MJ, Kranz DM, Lacey M, Kaufman JC, Kim J, Latimer DR, Lizardi PM.

Nat Biotechnol. 2004 Apr;22(4):418-26. Epub 2004 Mar 14.

PMID: 15024387 [PubMed - indexed for MEDLINE]

15:

Global analysis of gene expression in yeast.

Horak CE, Snyder M.

Funct Integr Genomics. 2002 Sep;2(4-5):171-80. Epub 2002 Jul 10. Review.

PMID: 12192590 [PubMed - indexed for MEDLINE]

16:

Characterization of a newly developed chicken 44K Agilent microarray.

Li X, Chiang HI, Zhu J, Dowd SE, Zhou H.

BMC Genomics. 2008 Jan 31;9:60.

PMID: 18237426 [PubMed - indexed for MEDLINE]

17:

Expression profiling of antisense transcripts on DNA arrays.

Werner A, Schmutzler G, Carlile M, Miles CG, Peters H.

Physiol Genomics. 2007 Feb 12;28(3):294-300. Epub 2006 Nov 14.

PMID: 17105753 [PubMed - indexed for MEDLINE]

18:

Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression.

Malig R, Varela C, Agosin E, Melo F.

BMC Bioinformatics. 2006 Nov 4;7:487.

PMID: 17083742 [PubMed - indexed for MEDLINE]

19:

Quantitative cDNA-AFLP analysis for genome-wide expression studies.

Breyne P, Dreesen R, Cannoot B, Rombaut D, Vandepoele K, Rombauts S, Vanderhaeghen R, Inzé D, Zabeau M.

Mol Genet Genomics. 2003 May;269(2):173-9. Epub 2003 Mar 18.

PMID: 12756529 [PubMed - indexed for MEDLINE]

20:

In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip technology.

Grigoryev DN, Ma SF, Simon BA, Irizarry RA, Ye SQ, Garcia JG.

BMC Genomics. 2005 May 4;6(1):62.

PMID: 15871745 [PubMed - indexed for MEDLINE]

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