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Items 1 - 20 of 100
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1:

Searching for differentially expressed gene combinations.

Dettling M, Gabrielson E, Parmigiani G.

Genome Biol. 2005;6(10):R88. Epub 2005 Sep 19.

PMID: 16207359 [PubMed - indexed for MEDLINE]

2:

Improve survival prediction using principal components of gene expression data.

Shen YJ, Huang SG.

Genomics Proteomics Bioinformatics. 2006 May;4(2):110-9.

PMID: 16970550 [PubMed - indexed for MEDLINE]

3:

Differentially profiling the low-expression transcriptomes of human hepatoma using a novel SSH/microarray approach.

Pan YS, Lee YS, Lee YL, Lee WC, Hsieh SY.

BMC Genomics. 2006 May 31;7:131.

PMID: 16737534 [PubMed - indexed for MEDLINE]

4:

The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison.

Sioson AA, Mane SP, Li P, Sha W, Heath LS, Bohnert HJ, Grene R.

BMC Bioinformatics. 2006 Apr 20;7:215.

PMID: 16626497 [PubMed - indexed for MEDLINE]

5:

A new method for gene discovery in large-scale microarray data.

Yano K, Imai K, Shimizu A, Hanashita T.

Nucleic Acids Res. 2006 Mar 14;34(5):1532-9. Print 2006.

PMID: 16537840 [PubMed - indexed for MEDLINE]

6:

Integration of HapMap-based SNP pattern analysis and gene expression profiling reveals common SNP profiles for cancer therapy outcome predictor genes.

Glinsky GV.

Cell Cycle. 2006 Nov;5(22):2613-25. Epub 2006 Nov 15.

PMID: 17172834 [PubMed - indexed for MEDLINE]

7:

Mining published lists of cancer related microarray experiments: identification of a gene expression signature having a critical role in cell-cycle control.

Finocchiaro G, Mancuso F, Muller H.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S14.

PMID: 16351740 [PubMed - indexed for MEDLINE]

8:

Genetic alteration and gene expression modulation during cancer progression.

Garnis C, Buys TP, Lam WL.

Mol Cancer. 2004 Mar 22;3:9. Review.

PMID: 15035667 [PubMed - indexed for MEDLINE]

9:

Comparison of gene expression profiles between primary tumor and metastatic lesions in gastric cancer patients using laser microdissection and cDNA microarray.

Wang L, Zhu JS, Song MQ, Chen GQ, Chen JL.

World J Gastroenterol. 2006 Nov 21;12(43):6949-54.

PMID: 17109515 [PubMed - indexed for MEDLINE]

10:

Topology-based cancer classification and related pathway mining using microarray data.

Liu CC, Chen WS, Lin CC, Liu HC, Chen HY, Yang PC, Chang PC, Chen JJ.

Nucleic Acids Res. 2006;34(14):4069-80. Epub 2006 Aug 16.

PMID: 16914437 [PubMed - indexed for MEDLINE]

11:

Identification of differentially expressed genes in multiple microarray experiments using discrete fourier transform.

Choo KW, Kong W.

Front Biosci. 2007 Jan 1;12:1845-51.

PMID: 17127425 [PubMed - indexed for MEDLINE]

12:

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.

Sartor MA, Tomlinson CR, Wesselkamper SC, Sivaganesan S, Leikauf GD, Medvedovic M.

BMC Bioinformatics. 2006 Dec 19;7:538.

PMID: 17177995 [PubMed - indexed for MEDLINE]

13:

Identifying differentially expressed genes in time-course microarray experiment without replicate.

Han X, Sung WK, Feng L.

J Bioinform Comput Biol. 2007 Apr;5(2a):281-96.

PMID: 17589962 [PubMed - indexed for MEDLINE]

14:

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

Jeffery IB, Higgins DG, Culhane AC.

BMC Bioinformatics. 2006 Jul 26;7:359.

PMID: 16872483 [PubMed - indexed for MEDLINE]

15:

Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues.

Aouacheria A, Navratil V, Barthelaix A, Mouchiroud D, Gautier C.

BMC Genomics. 2006 Apr 26;7:94.

PMID: 16640784 [PubMed - indexed for MEDLINE]

16:

maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments.

Conesa A, Nueda MJ, Ferrer A, Talón M.

Bioinformatics. 2006 May 1;22(9):1096-102. Epub 2006 Feb 15.

PMID: 16481333 [PubMed - indexed for MEDLINE]

17:

caGEDA: a web application for the integrated analysis of global gene expression patterns in cancer.

Patel S, Lyons-Weiler J.

Appl Bioinformatics. 2004;3(1):49-62.

PMID: 16323966 [PubMed - indexed for MEDLINE]

18:

A gene expression signature predicts survival of patients with stage I non-small cell lung cancer.

Lu Y, Lemon W, Liu PY, Yi Y, Morrison C, Yang P, Sun Z, Szoke J, Gerald WL, Watson M, Govindan R, You M.

PLoS Med. 2006 Dec;3(12):e467.

PMID: 17194181 [PubMed - indexed for MEDLINE]

19:

Identifying differential correlation in gene/pathway combinations.

Braun R, Cope L, Parmigiani G.

BMC Bioinformatics. 2008 Nov 18;9(1):488. [Epub ahead of print]

PMID: 19017408 [PubMed - as supplied by publisher]

20:

Covariate adjustment in the analysis of microarray data from clinical studies.

Ghosh D, Chinnaiyan AM.

Funct Integr Genomics. 2005 Jan;5(1):18-27. Epub 2004 Sep 17.

PMID: 15378393 [PubMed - indexed for MEDLINE]

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