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EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression.

Barrasa MI, Vaglio P, Cavasino F, Jacotot L, Walhout AJ.

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A gene-centered C. elegans protein-DNA interaction network.

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Synergistic activation of transcription by UNC-86 and MEC-3 in Caenorhabditis elegans embryo extracts.

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Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network.

Vermeirssen V, Barrasa MI, Hidalgo CA, Babon JA, Sequerra R, Doucette-Stamm L, Barabási AL, Walhout AJ.

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Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods.

GuhaThakurta D, Palomar L, Stormo GD, Tedesco P, Johnson TE, Walker DW, Lithgow G, Kim S, Link CD.

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Combined functional genomic maps of the C. elegans DNA damage response.

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Science. 2002 Jan 4;295(5552):127-31.

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Protein interaction mapping in C. elegans using proteins involved in vulval development.

Walhout AJ, Sordella R, Lu X, Hartley JL, Temple GF, Brasch MA, Thierry-Mieg N, Vidal M.

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Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns.

Reece-Hoyes JS, Shingles J, Dupuy D, Grove CA, Walhout AJ, Vidal M, Hope IA.

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A map of the interactome network of the metazoan C. elegans.

Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF, Jacotot L, Vaglio P, Reboul J, Hirozane-Kishikawa T, Li Q, Gabel HW, Elewa A, Baumgartner B, Rose DJ, Yu H, Bosak S, Sequerra R, Fraser A, Mango SE, Saxton WM, Strome S, Van Den Heuvel S, Piano F, Vandenhaute J, Sardet C, Gerstein M, Doucette-Stamm L, Gunsalus KC, Harper JW, Cusick ME, Roth FP, Hill DE, Vidal M.

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Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, Gotta M, Kanapin A, Le Bot N, Moreno S, Sohrmann M, Welchman DP, Zipperlen P, Ahringer J.

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NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.

Rambaldi D, Guffanti A, Morandi P, Cassata G.

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