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Items 1 - 20 of 134
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1:

A reanalysis of a published Affymetrix GeneChip control dataset.

Dabney AR, Storey JD.

Genome Biol. 2006;7(3):401. Epub 2006 Mar 22.

PMID: 16563185 [PubMed - indexed for MEDLINE]

2:

Feature-level exploration of a published Affymetrix GeneChip control dataset.

Irizarry RA, Cope LM, Wu Z.

Genome Biol. 2006;7(8):404.

PMID: 16953902 [PubMed - indexed for MEDLINE]

3:

Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset.

Choe SE, Boutros M, Michelson AM, Church GM, Halfon MS.

Genome Biol. 2005;6(2):R16. Epub 2005 Jan 28.

PMID: 15693945 [PubMed - indexed for MEDLINE]

4:

Expression profiling using affymetrix genechip probe arrays.

Schinke-Braun M, Couget JA.

Methods Mol Biol. 2007;366:13-40.

PMID: 17568117 [PubMed - indexed for MEDLINE]

5:

Systematic order-dependent effect in expression values, variance, detection calls and differential expression in Affymetrix GeneChips.

Bjork KE, Kafadar K.

Bioinformatics. 2007 Nov 1;23(21):2873-80. Epub 2007 Sep 25.

PMID: 17897972 [PubMed - indexed for MEDLINE]

7:

A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.

Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.

Theor Biol Med Model. 2006 Apr 7;3:19.

PMID: 16603076 [PubMed - indexed for MEDLINE]

8:

An overview of image-processing methods for Affymetrix GeneChips.

Arteaga-Salas JM, Zuzan H, Langdon WB, Upton GJ, Harrison AP.

Brief Bioinform. 2008 Jan;9(1):25-33. Epub 2007 Dec 5. Review.

PMID: 18057073 [PubMed - indexed for MEDLINE]

9:

An expression index for Affymetrix GeneChips based on the generalized logarithm.

Zhou L, Rocke DM.

Bioinformatics. 2005 Nov 1;21(21):3983-9. Epub 2005 Sep 13.

PMID: 16159924 [PubMed - indexed for MEDLINE]

10:

Comparison of Affymetrix GeneChip expression measures.

Irizarry RA, Wu Z, Jaffee HA.

Bioinformatics. 2006 Apr 1;22(7):789-94. Epub 2006 Jan 12.

PMID: 16410320 [PubMed - indexed for MEDLINE]

11:

Alternative mRNA polyadenylation can potentially affect detection of gene expression by affymetrix genechip arrays.

D'mello V, Lee JY, MacDonald CC, Tian B.

Appl Bioinformatics. 2006;5(4):249-53.

PMID: 17140271 [PubMed - indexed for MEDLINE]

12:

Pre-filtering improves reliability of Affymetrix GeneChips results when used to analyze gene expression in complex tissues.

Greco D, Leo D, di Porzio U, Perrone Capano C, Auvinen P.

Mol Cell Probes. 2008 Apr;22(2):115-21. Epub 2007 Nov 28.

PMID: 18162367 [PubMed - indexed for MEDLINE]

13:

Non-linear analysis of GeneChip arrays.

Abdueva D, Skvortsov D, Tavaré S.

Nucleic Acids Res. 2006;34(15):e105. Epub 2006 Aug 26.

PMID: 16936321 [PubMed - indexed for MEDLINE]

14:

Libaffy: software for processing Affymetrix GeneChip data.

Eschrich SA, Hoerter AM.

Bioinformatics. 2007 Jun 15;23(12):1562-4. Epub 2007 Apr 26.

PMID: 17463032 [PubMed - indexed for MEDLINE]

15:

Global mRNA changes in microarray experiments.

Hannah MA, Redestig H, Leisse A, Willmitzer L.

Nat Biotechnol. 2008 Jul;26(7):741-2. No abstract available.

PMID: 18612292 [PubMed - indexed for MEDLINE]

16:

AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data.

Lu G, Nguyen TV, Xia Y, Fromm M.

BMC Bioinformatics. 2006 Dec 12;7 Suppl 4:S26.

PMID: 17217519 [PubMed - indexed for MEDLINE]

17:

The effect of GeneChip gene definitions on the microarray study of cancers.

Lu X, Zhang X.

Bioessays. 2006 Jul;28(7):739-46.

PMID: 16850407 [PubMed - indexed for MEDLINE]

18:

Optimizing RNA extraction yield from whole blood for microarray gene expression analysis.

Wang J, Robinson JF, Khan HM, Carter DE, McKinney J, Miskie BA, Hegele RA.

Clin Biochem. 2004 Sep;37(9):741-4.

PMID: 15329310 [PubMed - indexed for MEDLINE]

19:

Monitoring eukaryotic gene expression using oligonucleotide microarrays.

Lescallett J, Chicurel ME, Lipshutz R, Dalma-Weiszhausz DD.

Methods Mol Biol. 2004;258:71-94.

PMID: 14970458 [PubMed - indexed for MEDLINE]

20:

Comparisons of annotation predictions for affymetrix GeneChips.

Stalteri M, Harrison A.

Appl Bioinformatics. 2006;5(4):237-48.

PMID: 17140270 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 134
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