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1:

Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins.

Hesselberth JR, Miller JP, Golob A, Stajich JE, Michaud GA, Fields S.

Genome Biol. 2006;7(4):R30. Epub 2006 Apr 10.

PMID: 16606443 [PubMed - indexed for MEDLINE]

2:

Solution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40.

Wiesner S, Stier G, Sattler M, Macias MJ.

J Mol Biol. 2002 Dec 6;324(4):807-22.

PMID: 12460579 [PubMed - indexed for MEDLINE]

3:

WW domains provide a platform for the assembly of multiprotein networks.

Ingham RJ, Colwill K, Howard C, Dettwiler S, Lim CS, Yu J, Hersi K, Raaijmakers J, Gish G, Mbamalu G, Taylor L, Yeung B, Vassilovski G, Amin M, Chen F, Matskova L, Winberg G, Ernberg I, Linding R, O'donnell P, Starostine A, Keller W, Metalnikov P, Stark C, Pawson T.

Mol Cell Biol. 2005 Aug;25(16):7092-106.

PMID: 16055720 [PubMed - indexed for MEDLINE]

4:

Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions.

Jothi R, Cherukuri PF, Tasneem A, Przytycka TM.

J Mol Biol. 2006 Sep 29;362(4):861-75. Epub 2006 Aug 1.

PMID: 16949097 [PubMed - indexed for MEDLINE]

5:

WW domains of Nedd4 bind to the proline-rich PY motifs in the epithelial Na+ channel deleted in Liddle's syndrome.

Staub O, Dho S, Henry P, Correa J, Ishikawa T, McGlade J, Rotin D.

EMBO J. 1996 May 15;15(10):2371-80.

PMID: 8665844 [PubMed - indexed for MEDLINE]

6:

Conserved network motifs allow protein-protein interaction prediction.

Albert I, Albert R.

Bioinformatics. 2004 Dec 12;20(18):3346-52. Epub 2004 Jul 9.

PMID: 15247093 [PubMed - indexed for MEDLINE]

7:

Interaction with the SH3 domain protein Bem1 regulates signaling by the Saccharomyces cerevisiae p21-activated kinase Ste20.

Winters MJ, Pryciak PM.

Mol Cell Biol. 2005 Mar;25(6):2177-90.

PMID: 15743816 [PubMed - indexed for MEDLINE]

8:

Characterizing Class I WW domains defines key specificity determinants and generates mutant domains with novel specificities.

Kasanov J, Pirozzi G, Uveges AJ, Kay BK.

Chem Biol. 2001 Mar;8(3):231-41.

PMID: 11306348 [PubMed - indexed for MEDLINE]

9:

A map of WW domain family interactions.

Hu H, Columbus J, Zhang Y, Wu D, Lian L, Yang S, Goodwin J, Luczak C, Carter M, Chen L, James M, Davis R, Sudol M, Rodwell J, Herrero JJ.

Proteomics. 2004 Mar;4(3):643-55.

PMID: 14997488 [PubMed - indexed for MEDLINE]

10:

On the detection of functionally coherent groups of protein domains with an extension to protein annotation.

McLaughlin WA, Chen K, Hou T, Wang W.

BMC Bioinformatics. 2007 Oct 16;8:390.

PMID: 17937820 [PubMed - indexed for MEDLINE]

11:

Characterization of the WW domain of human yes-associated protein and its polyproline-containing ligands.

Chen HI, Einbond A, Kwak SJ, Linn H, Koepf E, Peterson S, Kelly JW, Sudol M.

J Biol Chem. 1997 Jul 4;272(27):17070-7.

PMID: 9202023 [PubMed - indexed for MEDLINE]

12:

Comparative structural and energetic analysis of WW domain-peptide interactions.

Schleinkofer K, Wiedemann U, Otte L, Wang T, Krause G, Oschkinat H, Wade RC.

J Mol Biol. 2004 Nov 26;344(3):865-81.

PMID: 15533451 [PubMed - indexed for MEDLINE]

13:

GYF domain proteomics reveals interaction sites in known and novel target proteins.

Kofler M, Motzny K, Freund C.

Mol Cell Proteomics. 2005 Nov;4(11):1797-811. Epub 2005 Aug 23.

PMID: 16120600 [PubMed - indexed for MEDLINE]

14:

Rsp5 WW domains interact directly with the carboxyl-terminal domain of RNA polymerase II.

Chang A, Cheang S, Espanel X, Sudol M.

J Biol Chem. 2000 Jul 7;275(27):20562-71.

PMID: 10781604 [PubMed - indexed for MEDLINE]

15:

A neural strategy for the inference of SH3 domain-peptide interaction specificity.

Ferraro E, Via A, Ausiello G, Helmer-Citterich M.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S13.

PMID: 16351739 [PubMed - indexed for MEDLINE]

16:

Reuse of structural domain-domain interactions in protein networks.

Schuster-Böckler B, Bateman A.

BMC Bioinformatics. 2007 Jul 18;8:259.

PMID: 17640363 [PubMed - indexed for MEDLINE]

17:

Evolutionary cores of domain co-occurrence networks.

Wuchty S, Almaas E.

BMC Evol Biol. 2005 Mar 23;5(1):24.

PMID: 15788102 [PubMed - indexed for MEDLINE]

18:

Statistical analysis of domains in interacting protein pairs.

Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann SA.

Bioinformatics. 2005 Apr 1;21(7):993-1001. Epub 2004 Oct 27.

PMID: 15509600 [PubMed - indexed for MEDLINE]

19:

The structure of Prp40 FF1 domain and its interaction with the crn-TPR1 motif of Clf1 gives a new insight into the binding mode of FF domains.

Gasch A, Wiesner S, Martin-Malpartida P, Ramirez-Espain X, Ruiz L, Macias MJ.

J Biol Chem. 2006 Jan 6;281(1):356-64. Epub 2005 Oct 27.

PMID: 16253993 [PubMed - indexed for MEDLINE]

20:

Solution structure of the orphan PABC domain from Saccharomyces cerevisiae poly(A)-binding protein.

Kozlov G, Siddiqui N, Coillet-Matillon S, Trempe JF, Ekiel I, Sprules T, Gehring K.

J Biol Chem. 2002 Jun 21;277(25):22822-8. Epub 2002 Apr 8.

PMID: 11940585 [PubMed - indexed for MEDLINE]

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