Detecting transcriptionally active regions using genomic tiling arrays.

Halasz G, van Batenburg MF, Perusse J, Hua S, Lu XJ, White KP, Bussemaker HJ.

Genome Biol. 2006;7(7):R59.

PMID: 16859498 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Error-pooling-based statistical methods for identifying novel temporal replication profiles of human chromosomes observed by DNA tiling arrays.

Park T, Kim Y, Bekiranov S, Lee JK.

Nucleic Acids Res. 2007;35(9):e69. Epub 2007 Apr 11.

PMID: 17430969 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.

Emanuelsson O, Nagalakshmi U, Zheng D, Rozowsky JS, Urban AE, Du J, Lian Z, Stolc V, Weissman S, Snyder M, Gerstein MB.

Genome Res. 2007 Jun;17(6):886-97. Epub 2006 Nov 21.

PMID: 17119069 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M.

Bioinformatics. 2006 Dec 15;22(24):3016-24. Epub 2006 Oct 12.

PMID: 17038339 [PubMed - indexed for MEDLINE]

Related Articles

A hidden Markov model approach for determining expression from genomic tiling micro arrays.

Munch K, Gardner PP, Arctander P, Krogh A.

BMC Bioinformatics. 2006 May 3;7:239.

PMID: 16672042 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human.

Zhang Z, Pang AW, Gerstein M.

BMC Evol Biol. 2007 Feb 8;7 Suppl 1:S14.

PMID: 17288572 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Assessing the need for sequence-based normalization in tiling microarray experiments.

Royce TE, Rozowsky JS, Gerstein MB.

Bioinformatics. 2007 Apr 15;23(8):988-97. Epub 2007 Mar 25.

PMID: 17387113 [PubMed - indexed for MEDLINE]

Related Articles

In-depth query of large genomes using tiling arrays.

Samanta MP, Tongprasit W, Stolc V.

Methods Mol Biol. 2007;377:163-74. Review.

PMID: 17634616 [PubMed - indexed for MEDLINE]

Related Articles

Characteristics of oligonucleotide tiling arrays measured by hybridizing full-length cDNA clones: causes of signal variation and false positive signals.

Sasaki D, Kondo S, Maeda N, Gingeras TR, Hasegawa Y, Hayashizaki Y.

Genomics. 2007 Apr;89(4):541-51. Epub 2007 Feb 9.

PMID: 17292583 [PubMed - indexed for MEDLINE]

Related Articles

Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis.

Tomazou EM, Rakyan VK, Lefebvre G, Andrews R, Ellis P, Jackson DK, Langford C, Francis MD, Bäckdahl L, Miretti M, Coggill P, Ottaviani D, Sheer D, Murrell A, Beck S.

BMC Med Genomics. 2008 May 30;1:19.

PMID: 18513384 [PubMed - in process]

Related Articles Free article in PMC

Array-based comparative genomic hybridization: clinical contexts for targeted and whole-genome designs.

Aradhya S, Cherry AM.

Genet Med. 2007 Sep;9(9):553-9. Review.

PMID: 17873642 [PubMed - indexed for MEDLINE]

Related Articles

High-resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization.

Jönsson G, Staaf J, Olsson E, Heidenblad M, Vallon-Christersson J, Osoegawa K, de Jong P, Oredsson S, Ringnér M, Höglund M, Borg A.

Genes Chromosomes Cancer. 2007 Jun;46(6):543-58.

PMID: 17334996 [PubMed - indexed for MEDLINE]

Related Articles

An efficient pseudomedian filter for tiling microrrays.

Royce TE, Carriero NJ, Gerstein MB.

BMC Bioinformatics. 2007 Jun 7;8:186.

PMID: 17555595 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments.

Ghosh S, Hirsch HA, Sekinger E, Struhl K, Gingeras TR.

BMC Bioinformatics. 2006 Oct 5;7:434.

PMID: 17022824 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Ultra-high resolution array painting facilitates breakpoint sequencing.

Gribble SM, Kalaitzopoulos D, Burford DC, Prigmore E, Selzer RR, Ng BL, Matthews NS, Porter KM, Curley R, Lindsay SJ, Baptista J, Richmond TA, Carter NP.

J Med Genet. 2007 Jan;44(1):51-8. Epub 2006 Sep 13.

PMID: 16971479 [PubMed - indexed for MEDLINE]

Related Articles

Construction of a high-density and high-resolution human chromosome X array for comparative genomic hybridization analysis.

Hayashi S, Honda S, Minaguchi M, Makita Y, Okamoto N, Kosaki R, Okuyama T, Imoto I, Mizutani S, Inazawa J.

J Hum Genet. 2007;52(5):397-405. Epub 2007 Apr 4.

PMID: 17406783 [PubMed - indexed for MEDLINE]

Related Articles

Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.

Kloth JN, Oosting J, van Wezel T, Szuhai K, Knijnenburg J, Gorter A, Kenter GG, Fleuren GJ, Jordanova ES.

BMC Genomics. 2007 Feb 20;8:53.

PMID: 17311676 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Stacking the deck: double-tiled DNA microarrays.

Wheelan SJ, Martínez-Murillo F, Irizarry RA, Boeke JD.

Nat Methods. 2006 Nov;3(11):903-7.

PMID: 17060914 [PubMed - indexed for MEDLINE]

Related Articles

Tiling resolution array comparative genomic hybridization analysis of a fibrosarcoma of bone.

Hallor KH, Heidenblad M, Brosjö O, Mandahl N, Mertens F.

Cancer Genet Cytogenet. 2007 Jan 1;172(1):80-3.

PMID: 17175386 [PubMed - indexed for MEDLINE]

Related Articles

Optimized design and assessment of whole genome tiling arrays.

Gräf S, Nielsen FG, Kurtz S, Huynen MA, Birney E, Stunnenberg H, Flicek P.

Bioinformatics. 2007 Jul 1;23(13):i195-204.

PMID: 17646297 [PubMed - indexed for MEDLINE]

Related Articles