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Items 1 - 20 of 167
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1:

yrGATE: a web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes.

Wilkerson MD, Schlueter SD, Brendel V.

Genome Biol. 2006;7(7):R58.

PMID: 16859520 [PubMed - indexed for MEDLINE]

2:

GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.

Schlueter SD, Dong Q, Brendel V.

Nucleic Acids Res. 2003 Jul 1;31(13):3597-600.

PMID: 12824374 [PubMed - indexed for MEDLINE]

3:

PlantGDB: a resource for comparative plant genomics.

Duvick J, Fu A, Muppirala U, Sabharwal M, Wilkerson MD, Lawrence CJ, Lushbough C, Brendel V.

Nucleic Acids Res. 2008 Jan;36(Database issue):D959-65. Epub 2007 Dec 6.

PMID: 18063570 [PubMed - indexed for MEDLINE]

5:

PlantGDB, plant genome database and analysis tools.

Dong Q, Schlueter SD, Brendel V.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D354-9.

PMID: 14681433 [PubMed - indexed for MEDLINE]

6:

EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome.

Thibaud-Nissen F, Campbell M, Hamilton JP, Zhu W, Buell CR.

BMC Genomics. 2007 Oct 25;8:388.

PMID: 17961238 [PubMed - indexed for MEDLINE]

7:

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D71-4.

PMID: 15608288 [PubMed - indexed for MEDLINE]

8:

The TIGR Rice Genome Annotation Resource: improvements and new features.

Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR.

Nucleic Acids Res. 2007 Jan;35(Database issue):D883-7. Epub 2006 Dec 1.

PMID: 17145706 [PubMed - indexed for MEDLINE]

9:

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

PMID: 17062145 [PubMed - indexed for MEDLINE]

10:

ESTIMA, a tool for EST management in a multi-project environment.

Kumar CG, LeDuc R, Gong G, Roinishivili L, Lewin HA, Liu L.

BMC Bioinformatics. 2004 Nov 4;5:176.

PMID: 15527510 [PubMed - indexed for MEDLINE]

11:

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.

Cruveiller S, Le Saux J, Vallenet D, Lajus A, Bocs S, Médigue C.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W471-9.

PMID: 15980515 [PubMed - indexed for MEDLINE]

12:

Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome.

Tcherepanov V, Ehlers A, Upton C.

BMC Genomics. 2006 Jun 13;7:150.

PMID: 16772042 [PubMed - indexed for MEDLINE]

13:

The Gene Set Builder: collation, curation, and distribution of sets of genes.

Yusuf D, Lim JS, Wasserman WW.

BMC Bioinformatics. 2005 Dec 21;6:305.

PMID: 16371163 [PubMed - indexed for MEDLINE]

14:

OrthoMCL: identification of ortholog groups for eukaryotic genomes.

Li L, Stoeckert CJ Jr, Roos DS.

Genome Res. 2003 Sep;13(9):2178-89.

PMID: 12952885 [PubMed - indexed for MEDLINE]

15:

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

PMID: 17445272 [PubMed - indexed for MEDLINE]

16:

REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.

Linke B, McHardy AC, Neuweger H, Krause L, Meyer F.

Appl Bioinformatics. 2006;5(3):193-8.

PMID: 16922601 [PubMed - indexed for MEDLINE]

17:

The Gene Ontology (GO) database and informatics resource.

Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R; Gene Ontology Consortium.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D258-61.

PMID: 14681407 [PubMed - indexed for MEDLINE]

18:

GeneDB: a resource for prokaryotic and eukaryotic organisms.

Hertz-Fowler C, Peacock CS, Wood V, Aslett M, Kerhornou A, Mooney P, Tivey A, Berriman M, Hall N, Rutherford K, Parkhill J, Ivens AC, Rajandream MA, Barrell B.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D339-43.

PMID: 14681429 [PubMed - indexed for MEDLINE]

19:

SAGExplore: a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotation.

Norambuena T, Malig R, Melo F.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W163-8. Epub 2007 Jul 10.

PMID: 17626053 [PubMed - indexed for MEDLINE]

20:

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.

Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, Ware D.

Nucleic Acids Res. 2008 Jan;36(Database issue):D449-54.

PMID: 18194960 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 167
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